miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26306 5' -63.3 NC_005345.2 + 24225 0.66 0.333081
Target:  5'- gCGGCGGCuGC--UCCCacaCGCCGagCGUGAa -3'
miRNA:   3'- -GCCGCCG-CGuuAGGG---GCGGUg-GCGCU- -5'
26306 5' -63.3 NC_005345.2 + 37482 0.66 0.333081
Target:  5'- gGGCGaGCGguAcgacgUUCCCGCCgGgCGCGGg -3'
miRNA:   3'- gCCGC-CGCguU-----AGGGGCGG-UgGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 27159 0.66 0.333081
Target:  5'- aGGCGcuGCGCGGcgUCCCGCCggaggaggucuACCGCc- -3'
miRNA:   3'- gCCGC--CGCGUUa-GGGGCGG-----------UGGCGcu -5'
26306 5' -63.3 NC_005345.2 + 6618 0.66 0.333081
Target:  5'- cCGGCGGCGguugCgCCCGgCGgUGCGAc -3'
miRNA:   3'- -GCCGCCGCguuaG-GGGCgGUgGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 8633 0.66 0.330778
Target:  5'- cCGGCGGCGUcgcaguacaccucgGcgCCgaUCGUCGCgGCGAu -3'
miRNA:   3'- -GCCGCCGCG--------------UuaGG--GGCGGUGgCGCU- -5'
26306 5' -63.3 NC_005345.2 + 326 0.66 0.32545
Target:  5'- gGGCGGgGCGG-CUCCGCUcugACCGaaucaGAg -3'
miRNA:   3'- gCCGCCgCGUUaGGGGCGG---UGGCg----CU- -5'
26306 5' -63.3 NC_005345.2 + 33071 0.66 0.32545
Target:  5'- aGGUGGgGguGUCCaucacaCCGaCC-CCGCGAu -3'
miRNA:   3'- gCCGCCgCguUAGG------GGC-GGuGGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 34639 0.66 0.32545
Target:  5'- gGGCGGUGCGcugcUCCCgGUCucgGCCGUa- -3'
miRNA:   3'- gCCGCCGCGUu---AGGGgCGG---UGGCGcu -5'
26306 5' -63.3 NC_005345.2 + 43936 0.66 0.32545
Target:  5'- aGGcCGGcCGCGAgcugCCCgGCCguGCCGgGGc -3'
miRNA:   3'- gCC-GCC-GCGUUa---GGGgCGG--UGGCgCU- -5'
26306 5' -63.3 NC_005345.2 + 6188 0.66 0.32545
Target:  5'- cCGGUucGuGCGCGugccgCCCgGCCcguCCGCGAg -3'
miRNA:   3'- -GCCG--C-CGCGUua---GGGgCGGu--GGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 34095 0.66 0.322435
Target:  5'- aGGcCGGCGCccgcgacggcgacAUCgCCGCCGaCGCGAu -3'
miRNA:   3'- gCC-GCCGCGu------------UAGgGGCGGUgGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 32248 0.66 0.320935
Target:  5'- gCGGCagcagugccucgacgGGCGCcuUCCgCCGCCacgcucggccguACCGCGc -3'
miRNA:   3'- -GCCG---------------CCGCGuuAGG-GGCGG------------UGGCGCu -5'
26306 5' -63.3 NC_005345.2 + 20502 0.66 0.317951
Target:  5'- uCGGuCGGgGCuuUCCgCUGCC-CCGgGAu -3'
miRNA:   3'- -GCC-GCCgCGuuAGG-GGCGGuGGCgCU- -5'
26306 5' -63.3 NC_005345.2 + 28778 0.66 0.317951
Target:  5'- aCGGUcaugaGGCGCAugacgcGUCCCCGUCGCUcccacaGCa- -3'
miRNA:   3'- -GCCG-----CCGCGU------UAGGGGCGGUGG------CGcu -5'
26306 5' -63.3 NC_005345.2 + 30574 0.66 0.317951
Target:  5'- cCGGCGGUGU--UCCCgacgcugggCGCgCACCcgGCGAg -3'
miRNA:   3'- -GCCGCCGCGuuAGGG---------GCG-GUGG--CGCU- -5'
26306 5' -63.3 NC_005345.2 + 39116 0.66 0.317951
Target:  5'- uCGGCGagcagcccgcauGCGCAGUUgaaaUCgGCCGCgGCGAg -3'
miRNA:   3'- -GCCGC------------CGCGUUAG----GGgCGGUGgCGCU- -5'
26306 5' -63.3 NC_005345.2 + 40018 0.66 0.317951
Target:  5'- cCGGCcgacauGGCGUgcuugggcaGAUCUUCGaUCACCGCGAc -3'
miRNA:   3'- -GCCG------CCGCG---------UUAGGGGC-GGUGGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 43461 0.66 0.317951
Target:  5'- aCGGCGGCGaguUCgCgGCgCAgCGCGGu -3'
miRNA:   3'- -GCCGCCGCguuAGgGgCG-GUgGCGCU- -5'
26306 5' -63.3 NC_005345.2 + 10875 0.66 0.310583
Target:  5'- -cGCGGCGCGucccGUgCCCGCaC-CCGCa- -3'
miRNA:   3'- gcCGCCGCGU----UAgGGGCG-GuGGCGcu -5'
26306 5' -63.3 NC_005345.2 + 16350 0.66 0.310583
Target:  5'- uCGGCGGCaucGCGG---CCGgCGCCGCGGu -3'
miRNA:   3'- -GCCGCCG---CGUUaggGGCgGUGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.