miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26307 3' -57.3 NC_005345.2 + 32809 0.65 0.58798
Target:  5'- cGG-CGCguuccGCGAGGCacucgggaagcaguGGGCcGAGUUCGa -3'
miRNA:   3'- -CCgGUGa----CGUUCCG--------------CCCGaCUCAAGC- -5'
26307 3' -57.3 NC_005345.2 + 21382 0.66 0.558679
Target:  5'- aGGCCGgUGCGcGGGUgacgGGGCaGAGUgCGu -3'
miRNA:   3'- -CCGGUgACGU-UCCG----CCCGaCUCAaGC- -5'
26307 3' -57.3 NC_005345.2 + 1324 0.66 0.547927
Target:  5'- aGCCGCUGCGgguccuccaGGGCGaGGCgcugucgaagUGGGUUg- -3'
miRNA:   3'- cCGGUGACGU---------UCCGC-CCG----------ACUCAAgc -5'
26307 3' -57.3 NC_005345.2 + 4352 0.66 0.547927
Target:  5'- gGGUC-CUGCcucGGGCGGGCgggccgcucggUGGGggugUCGg -3'
miRNA:   3'- -CCGGuGACGu--UCCGCCCG-----------ACUCa---AGC- -5'
26307 3' -57.3 NC_005345.2 + 31942 0.66 0.537241
Target:  5'- cGGCgGgUGCGGGuGCGGGUgcGGGUgCGg -3'
miRNA:   3'- -CCGgUgACGUUC-CGCCCGa-CUCAaGC- -5'
26307 3' -57.3 NC_005345.2 + 30108 0.67 0.516094
Target:  5'- cGGCCAgggcgGCGAGGCGGaGCagcggcccGAGggCGg -3'
miRNA:   3'- -CCGGUga---CGUUCCGCC-CGa-------CUCaaGC- -5'
26307 3' -57.3 NC_005345.2 + 9652 0.67 0.505646
Target:  5'- cGGCg--UGUggGGCGGGCUGAcGUaccgCGa -3'
miRNA:   3'- -CCGgugACGuuCCGCCCGACU-CAa---GC- -5'
26307 3' -57.3 NC_005345.2 + 27470 0.67 0.49529
Target:  5'- gGGCC-CUGaggGGGGCGGGggGAGggagUCa -3'
miRNA:   3'- -CCGGuGACg--UUCCGCCCgaCUCa---AGc -5'
26307 3' -57.3 NC_005345.2 + 35751 0.67 0.474876
Target:  5'- cGGCgcaggacgaACcgGCGGGGCGGGgCggUGGGUUCGg -3'
miRNA:   3'- -CCGg--------UGa-CGUUCCGCCC-G--ACUCAAGC- -5'
26307 3' -57.3 NC_005345.2 + 8404 0.68 0.464827
Target:  5'- aGCCGCUGCcggucgacGGGGCGcGGCUGGa---- -3'
miRNA:   3'- cCGGUGACG--------UUCCGC-CCGACUcaagc -5'
26307 3' -57.3 NC_005345.2 + 23673 0.68 0.45489
Target:  5'- gGGUCGCggccgGUcGGGCGGGCcGAGcgCa -3'
miRNA:   3'- -CCGGUGa----CGuUCCGCCCGaCUCaaGc -5'
26307 3' -57.3 NC_005345.2 + 45503 0.68 0.41634
Target:  5'- cGGCCGCUGCcgc-CGGGCUGcGgaCGg -3'
miRNA:   3'- -CCGGUGACGuuccGCCCGACuCaaGC- -5'
26307 3' -57.3 NC_005345.2 + 20984 0.69 0.388773
Target:  5'- uGGCCGCgGCGAGGaacgccgacCGGGCgacGcGUUCGc -3'
miRNA:   3'- -CCGGUGaCGUUCC---------GCCCGa--CuCAAGC- -5'
26307 3' -57.3 NC_005345.2 + 15134 0.69 0.388773
Target:  5'- cGGCCcccgucCUGCGGGuCGGGC-GGGUUCa -3'
miRNA:   3'- -CCGGu-----GACGUUCcGCCCGaCUCAAGc -5'
26307 3' -57.3 NC_005345.2 + 37565 0.69 0.388773
Target:  5'- cGGCCcgagGCggGCGcAGGCGGGCUGcAGgcgggCGa -3'
miRNA:   3'- -CCGG----UGa-CGU-UCCGCCCGAC-UCaa---GC- -5'
26307 3' -57.3 NC_005345.2 + 31471 0.69 0.379854
Target:  5'- uGCgGgUGUGAGGCGGGC-GAGcgCGg -3'
miRNA:   3'- cCGgUgACGUUCCGCCCGaCUCaaGC- -5'
26307 3' -57.3 NC_005345.2 + 21757 0.69 0.362431
Target:  5'- gGGCCccuguGCUGCucgcuGGCGGGCgagccgGGG-UCGg -3'
miRNA:   3'- -CCGG-----UGACGuu---CCGCCCGa-----CUCaAGC- -5'
26307 3' -57.3 NC_005345.2 + 3392 0.69 0.362431
Target:  5'- uGCCACggcgGCGAGuuCGGGCUGAGagaggCGg -3'
miRNA:   3'- cCGGUGa---CGUUCc-GCCCGACUCaa---GC- -5'
26307 3' -57.3 NC_005345.2 + 23399 0.7 0.345571
Target:  5'- -uCCGCauugaGCAGGGCGGGCagcucgucGAGUUCGu -3'
miRNA:   3'- ccGGUGa----CGUUCCGCCCGa-------CUCAAGC- -5'
26307 3' -57.3 NC_005345.2 + 3707 0.71 0.305923
Target:  5'- cGGCCGCcggcgGCGAGGUGcaGCUGAucGUUCGc -3'
miRNA:   3'- -CCGGUGa----CGUUCCGCc-CGACU--CAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.