miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26307 5' -57.4 NC_005345.2 + 13251 0.66 0.570687
Target:  5'- -aCGACcgUCGGCAcgACCggcgagCAGCUCGUcGGCg -3'
miRNA:   3'- aaGCUG--AGCCGU--UGG------GUCGGGCA-UCG- -5'
26307 5' -57.4 NC_005345.2 + 41535 0.66 0.559833
Target:  5'- -gCGuCUCGGCGACCUGGUcgacgacgUCGUGcGCg -3'
miRNA:   3'- aaGCuGAGCCGUUGGGUCG--------GGCAU-CG- -5'
26307 5' -57.4 NC_005345.2 + 14375 0.66 0.559833
Target:  5'- -gCGcaGCUCGGCGA-CCGGCCgGU-GCc -3'
miRNA:   3'- aaGC--UGAGCCGUUgGGUCGGgCAuCG- -5'
26307 5' -57.4 NC_005345.2 + 18433 0.66 0.559833
Target:  5'- -gUGAUUCugugGGCgAACCUGcGCCCGUGGUg -3'
miRNA:   3'- aaGCUGAG----CCG-UUGGGU-CGGGCAUCG- -5'
26307 5' -57.4 NC_005345.2 + 29361 0.66 0.559833
Target:  5'- cUUCGGCcgcaUCGGCAgucACUCGG-UCGUGGCc -3'
miRNA:   3'- -AAGCUG----AGCCGU---UGGGUCgGGCAUCG- -5'
26307 5' -57.4 NC_005345.2 + 42677 0.66 0.559833
Target:  5'- cUCGccgccguacaGCUCGGCGGCCCGcucgauguacGUCCGcgAGUg -3'
miRNA:   3'- aAGC----------UGAGCCGUUGGGU----------CGGGCa-UCG- -5'
26307 5' -57.4 NC_005345.2 + 30687 0.66 0.559833
Target:  5'- cUUCGGgUCGcGgGACCCGGUCCaccacgGGCg -3'
miRNA:   3'- -AAGCUgAGC-CgUUGGGUCGGGca----UCG- -5'
26307 5' -57.4 NC_005345.2 + 4458 0.66 0.549036
Target:  5'- --aGGCUcCGGCGgggGCCCGGCggCCGUguccGGCu -3'
miRNA:   3'- aagCUGA-GCCGU---UGGGUCG--GGCA----UCG- -5'
26307 5' -57.4 NC_005345.2 + 3763 0.66 0.549036
Target:  5'- gUgGGCUUGGCAcACCCccacucGCCggaCGUGGCg -3'
miRNA:   3'- aAgCUGAGCCGU-UGGGu-----CGG---GCAUCG- -5'
26307 5' -57.4 NC_005345.2 + 7045 0.66 0.549036
Target:  5'- -cCGGCgaucgaGGCGGCCCGGCCgGacuacGCg -3'
miRNA:   3'- aaGCUGag----CCGUUGGGUCGGgCau---CG- -5'
26307 5' -57.4 NC_005345.2 + 42918 0.66 0.549036
Target:  5'- gUUCGuAC-CGGCGA-CCAGCCgG-AGCa -3'
miRNA:   3'- -AAGC-UGaGCCGUUgGGUCGGgCaUCG- -5'
26307 5' -57.4 NC_005345.2 + 37229 0.66 0.527647
Target:  5'- -gCGugUCGGCGG-CguGCCguaGUAGCg -3'
miRNA:   3'- aaGCugAGCCGUUgGguCGGg--CAUCG- -5'
26307 5' -57.4 NC_005345.2 + 29981 0.66 0.527647
Target:  5'- gUCGACg-GGCAGCCguacgGGCCCGgcGa -3'
miRNA:   3'- aAGCUGagCCGUUGGg----UCGGGCauCg -5'
26307 5' -57.4 NC_005345.2 + 7479 0.66 0.517068
Target:  5'- aUCGAcCUCGGC-GCCgagaAGCCCcucacgcuggaGUGGCu -3'
miRNA:   3'- aAGCU-GAGCCGuUGGg---UCGGG-----------CAUCG- -5'
26307 5' -57.4 NC_005345.2 + 5593 0.66 0.517068
Target:  5'- cUUCGcGCUCGuGCcguggggcGCCgGGCUCGUGGCc -3'
miRNA:   3'- -AAGC-UGAGC-CGu-------UGGgUCGGGCAUCG- -5'
26307 5' -57.4 NC_005345.2 + 20529 0.66 0.517068
Target:  5'- aUCGGCcugCGGCGACac-GCCCGgcauGCg -3'
miRNA:   3'- aAGCUGa--GCCGUUGgguCGGGCau--CG- -5'
26307 5' -57.4 NC_005345.2 + 16614 0.66 0.517068
Target:  5'- --aGACg-GGCGGCCCGGaCCCGc-GCa -3'
miRNA:   3'- aagCUGagCCGUUGGGUC-GGGCauCG- -5'
26307 5' -57.4 NC_005345.2 + 18881 0.66 0.517068
Target:  5'- cUCgGGCUCGaCgAGCCCGGCCUGcucGGCg -3'
miRNA:   3'- aAG-CUGAGCcG-UUGGGUCGGGCa--UCG- -5'
26307 5' -57.4 NC_005345.2 + 26629 0.66 0.517068
Target:  5'- -cCGugUCGGgcGCCCGGCCg--GGCg -3'
miRNA:   3'- aaGCugAGCCguUGGGUCGGgcaUCG- -5'
26307 5' -57.4 NC_005345.2 + 2996 0.66 0.517068
Target:  5'- gUCGGCgguacgGGCGGCCgaGGCCaGUAGCc -3'
miRNA:   3'- aAGCUGag----CCGUUGGg-UCGGgCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.