miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26308 3' -63 NC_005345.2 + 3653 0.66 0.369014
Target:  5'- gCCCGGCgGC-AGCgGCCGggaucguguCGUuuGCCGg -3'
miRNA:   3'- -GGGCCGgCGcUCG-CGGU---------GCAugCGGC- -5'
26308 3' -63 NC_005345.2 + 16944 0.66 0.369014
Target:  5'- gCCGGCCGCucgacGAGaCGCCuCGgcaccucgGCCGg -3'
miRNA:   3'- gGGCCGGCG-----CUC-GCGGuGCaug-----CGGC- -5'
26308 3' -63 NC_005345.2 + 43523 0.66 0.369014
Target:  5'- aCCCGGCgcuCGCgGAGCggaucGCCGagcuCGU-CGCCGa -3'
miRNA:   3'- -GGGCCG---GCG-CUCG-----CGGU----GCAuGCGGC- -5'
26308 3' -63 NC_005345.2 + 36668 0.66 0.369014
Target:  5'- aUCCGcCCGCGuGCG-CACGgacGCGCUGc -3'
miRNA:   3'- -GGGCcGGCGCuCGCgGUGCa--UGCGGC- -5'
26308 3' -63 NC_005345.2 + 42710 0.66 0.369014
Target:  5'- aCCCGGCUGgauaucGGCGaCCACu--CGCCGa -3'
miRNA:   3'- -GGGCCGGCgc----UCGC-GGUGcauGCGGC- -5'
26308 3' -63 NC_005345.2 + 48612 0.66 0.369014
Target:  5'- gCCGGCUGUucgGAGgGCaucccuccaACGUcCGCCGa -3'
miRNA:   3'- gGGCCGGCG---CUCgCGg--------UGCAuGCGGC- -5'
26308 3' -63 NC_005345.2 + 17841 0.66 0.369014
Target:  5'- gCCCGGCCGcCGGGCcCCGgcgacaucccccCGUgGCGCg- -3'
miRNA:   3'- -GGGCCGGC-GCUCGcGGU------------GCA-UGCGgc -5'
26308 3' -63 NC_005345.2 + 2061 0.66 0.365742
Target:  5'- gCgGGCCGCGGcgaaaauGCGCUcuucggugaacuucGgGUACGCCu -3'
miRNA:   3'- gGgCCGGCGCU-------CGCGG--------------UgCAUGCGGc -5'
26308 3' -63 NC_005345.2 + 441 0.66 0.364114
Target:  5'- uCCCGGUucuucaccuCGCGGGCgaggccugcagccuuGauugcagggauCCAUGUGCGCCGg -3'
miRNA:   3'- -GGGCCG---------GCGCUCG---------------C-----------GGUGCAUGCGGC- -5'
26308 3' -63 NC_005345.2 + 23458 0.66 0.360872
Target:  5'- aCCGGUcacgccgagCGCGAGCaGCCG-GUGCaCCGa -3'
miRNA:   3'- gGGCCG---------GCGCUCG-CGGUgCAUGcGGC- -5'
26308 3' -63 NC_005345.2 + 18516 0.66 0.360872
Target:  5'- gCUCGG-CGUccucGGCGCCAUGUGCaCCGg -3'
miRNA:   3'- -GGGCCgGCGc---UCGCGGUGCAUGcGGC- -5'
26308 3' -63 NC_005345.2 + 45500 0.66 0.360872
Target:  5'- uCCCGGCCGCu-GcCGCCGgGcUGCGgaCGg -3'
miRNA:   3'- -GGGCCGGCGcuC-GCGGUgC-AUGCg-GC- -5'
26308 3' -63 NC_005345.2 + 28140 0.66 0.360872
Target:  5'- aCCCgGGCCgGCGAacGCGUCgcccggucgGCGUuccuCGCCGc -3'
miRNA:   3'- -GGG-CCGG-CGCU--CGCGG---------UGCAu---GCGGC- -5'
26308 3' -63 NC_005345.2 + 39249 0.66 0.360872
Target:  5'- gCCCGGaCGgGaAGCGCacguuCGUGCGCgGc -3'
miRNA:   3'- -GGGCCgGCgC-UCGCGgu---GCAUGCGgC- -5'
26308 3' -63 NC_005345.2 + 13191 0.66 0.360872
Target:  5'- aCCGGCC-CGAGCGgCAgccCGcGCGgCGa -3'
miRNA:   3'- gGGCCGGcGCUCGCgGU---GCaUGCgGC- -5'
26308 3' -63 NC_005345.2 + 16922 0.66 0.360872
Target:  5'- cCCCGGUCGCGGuCaCCGCGgACGagcCCGg -3'
miRNA:   3'- -GGGCCGGCGCUcGcGGUGCaUGC---GGC- -5'
26308 3' -63 NC_005345.2 + 25139 0.66 0.360872
Target:  5'- cCUCGGCgagCGCGAucGCGCCgACGaACGgCGa -3'
miRNA:   3'- -GGGCCG---GCGCU--CGCGG-UGCaUGCgGC- -5'
26308 3' -63 NC_005345.2 + 17127 0.66 0.360872
Target:  5'- gCCGGauccagCGCGGuCGCgACGUugGUCGg -3'
miRNA:   3'- gGGCCg-----GCGCUcGCGgUGCAugCGGC- -5'
26308 3' -63 NC_005345.2 + 38591 0.66 0.360872
Target:  5'- gUCGGCaucgugGCGAGCGCCuCGgacACGgCGa -3'
miRNA:   3'- gGGCCGg-----CGCUCGCGGuGCa--UGCgGC- -5'
26308 3' -63 NC_005345.2 + 8631 0.66 0.357651
Target:  5'- uUCCGGCgGCGucgcaguacaccucGGCGCCgaucgucGCGgcgaucuCGCCGa -3'
miRNA:   3'- -GGGCCGgCGC--------------UCGCGG-------UGCau-----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.