miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26308 5' -56.1 NC_005345.2 + 36202 0.66 0.677369
Target:  5'- gCGCGU-CGgacaCGGGGuaccUCUUCUGUCGGg -3'
miRNA:   3'- -GCGCAuGCg---GCUCU----GGAAGACAGCCa -5'
26308 5' -56.1 NC_005345.2 + 32534 0.66 0.666487
Target:  5'- gGCGUGCauGCCGAcGCCgaggggGUCGGg -3'
miRNA:   3'- gCGCAUG--CGGCUcUGGaaga--CAGCCa -5'
26308 5' -56.1 NC_005345.2 + 18847 0.66 0.663215
Target:  5'- uGCGUACGCCGccACCgggcuacuccuucggCUGcUCGGg -3'
miRNA:   3'- gCGCAUGCGGCucUGGaa-------------GAC-AGCCa -5'
26308 5' -56.1 NC_005345.2 + 19402 0.66 0.654479
Target:  5'- aGCGUcGCGCCGAGcucggucggcugcGCCgc--GUCGGUc -3'
miRNA:   3'- gCGCA-UGCGGCUC-------------UGGaagaCAGCCA- -5'
26308 5' -56.1 NC_005345.2 + 5422 0.66 0.642447
Target:  5'- aGCGUcuCGCCGAGuuCUUCggcggcgcccggGUCGGc -3'
miRNA:   3'- gCGCAu-GCGGCUCugGAAGa-----------CAGCCa -5'
26308 5' -56.1 NC_005345.2 + 30544 0.66 0.633689
Target:  5'- gGCaGUAUGCCGAGACCcUCggcgagGaCGGc -3'
miRNA:   3'- gCG-CAUGCGGCUCUGGaAGa-----CaGCCa -5'
26308 5' -56.1 NC_005345.2 + 43345 0.67 0.62274
Target:  5'- gCGCGUACGgCucGACC-UCgggGUCGGc -3'
miRNA:   3'- -GCGCAUGCgGcuCUGGaAGa--CAGCCa -5'
26308 5' -56.1 NC_005345.2 + 21420 0.67 0.600876
Target:  5'- uGuCGUugGCgCGAGGCCggccgcgUCUG-CGGa -3'
miRNA:   3'- gC-GCAugCG-GCUCUGGa------AGACaGCCa -5'
26308 5' -56.1 NC_005345.2 + 37061 0.67 0.579118
Target:  5'- gGCGgcgACGUCGucGAUCUgucgCUGUCGGc -3'
miRNA:   3'- gCGCa--UGCGGCu-CUGGAa---GACAGCCa -5'
26308 5' -56.1 NC_005345.2 + 43376 0.68 0.546826
Target:  5'- aCGCGUACGCCGAccugcgGACCgcc--UCGGc -3'
miRNA:   3'- -GCGCAUGCGGCU------CUGGaagacAGCCa -5'
26308 5' -56.1 NC_005345.2 + 5920 0.68 0.525616
Target:  5'- ---aUACGCCGGGACCggugacCUGUgGGUg -3'
miRNA:   3'- gcgcAUGCGGCUCUGGaa----GACAgCCA- -5'
26308 5' -56.1 NC_005345.2 + 42459 0.69 0.494413
Target:  5'- gCGCGgcgauaucgACGCCGAGGCCgUC-GUCGa- -3'
miRNA:   3'- -GCGCa--------UGCGGCUCUGGaAGaCAGCca -5'
26308 5' -56.1 NC_005345.2 + 18526 0.69 0.454188
Target:  5'- gGCGUcgGCGuCCGGGGCggUCUGaUCGGg -3'
miRNA:   3'- gCGCA--UGC-GGCUCUGgaAGAC-AGCCa -5'
26308 5' -56.1 NC_005345.2 + 37638 0.78 0.131365
Target:  5'- aCGCGUACGUCGAGACCgUCgucGUCGa- -3'
miRNA:   3'- -GCGCAUGCGGCUCUGGaAGa--CAGCca -5'
26308 5' -56.1 NC_005345.2 + 10605 1.08 0.000977
Target:  5'- gCGCGUACGCCGAGACCUUCUGUCGGUa -3'
miRNA:   3'- -GCGCAUGCGGCUCUGGAAGACAGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.