Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2631 | 3' | -47.9 | NC_001491.2 | + | 25158 | 0.73 | 0.92947 |
Target: 5'- gGAGGCGCCgagagGCgAGCGUAAGCAc -3' miRNA: 3'- -UUUCGCGGaaacaUGgUUGCGUUUGU- -5' |
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2631 | 3' | -47.9 | NC_001491.2 | + | 144631 | 0.73 | 0.92947 |
Target: 5'- --uGCGCCUgg--GCCAACGCGGAg- -3' miRNA: 3'- uuuCGCGGAaacaUGGUUGCGUUUgu -5' |
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2631 | 3' | -47.9 | NC_001491.2 | + | 144333 | 1.07 | 0.017206 |
Target: 5'- aAAAGCGCCUUUGUACCAACGCAAACAg -3' miRNA: 3'- -UUUCGCGGAAACAUGGUUGCGUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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