miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26310 3' -62.1 NC_005345.2 + 31780 0.66 0.403731
Target:  5'- gGUGCGgggucgacgcaCUcggguUCgCCGUCCGGGUCGGggUCCg -3'
miRNA:   3'- gCACGC-----------GA-----AG-GGCAGGCCCGGCU--GGG- -5'
26310 3' -62.1 NC_005345.2 + 9058 0.66 0.398494
Target:  5'- uCGUGCaggUCCgCGacuuuaUCCGGGCCGccgucgccggcgaccGCCCg -3'
miRNA:   3'- -GCACGcgaAGG-GC------AGGCCCGGC---------------UGGG- -5'
26310 3' -62.1 NC_005345.2 + 47946 0.66 0.395027
Target:  5'- gCG-GCGUggCCCGcgggCCGGacuGCCGAgCCg -3'
miRNA:   3'- -GCaCGCGaaGGGCa---GGCC---CGGCUgGG- -5'
26310 3' -62.1 NC_005345.2 + 16836 0.66 0.395027
Target:  5'- aCG-GCGCUUCUUcaCCGcGCCGuCCCg -3'
miRNA:   3'- -GCaCGCGAAGGGcaGGCcCGGCuGGG- -5'
26310 3' -62.1 NC_005345.2 + 19084 0.66 0.386446
Target:  5'- --cGCGa---UCGUgCGGGCCGugCCg -3'
miRNA:   3'- gcaCGCgaagGGCAgGCCCGGCugGG- -5'
26310 3' -62.1 NC_005345.2 + 22611 0.66 0.385594
Target:  5'- -aUGCGCUgcgCCUGcggugguUCCGGcGCuCGugCCg -3'
miRNA:   3'- gcACGCGAa--GGGC-------AGGCC-CG-GCugGG- -5'
26310 3' -62.1 NC_005345.2 + 30151 0.66 0.377988
Target:  5'- --gGCGCcgcCCCGcUCGGGCCGagGCUCg -3'
miRNA:   3'- gcaCGCGaa-GGGCaGGCCCGGC--UGGG- -5'
26310 3' -62.1 NC_005345.2 + 17958 0.66 0.377988
Target:  5'- gCGUcCGCUcggccgCCUG-CCGGGCCGcgGCCUc -3'
miRNA:   3'- -GCAcGCGAa-----GGGCaGGCCCGGC--UGGG- -5'
26310 3' -62.1 NC_005345.2 + 31431 0.66 0.377149
Target:  5'- gGUGC-CUgucgguucacgggUCCCGUcgCCGaGGCCGGCgCg -3'
miRNA:   3'- gCACGcGA-------------AGGGCA--GGC-CCGGCUGgG- -5'
26310 3' -62.1 NC_005345.2 + 37146 0.66 0.377149
Target:  5'- --aGCGUcgUCCCGagucguuccugCCGGaucgcgaGCCGACCCg -3'
miRNA:   3'- gcaCGCGa-AGGGCa----------GGCC-------CGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 36510 0.66 0.376311
Target:  5'- aGUGCGCccgcuccgaggCCCGgugcCCGaGCCGugCCc -3'
miRNA:   3'- gCACGCGaa---------GGGCa---GGCcCGGCugGG- -5'
26310 3' -62.1 NC_005345.2 + 15044 0.66 0.369656
Target:  5'- uCGgcgGCGaugUCgCCGUCgCGGgcGCCGGCCUg -3'
miRNA:   3'- -GCa--CGCga-AG-GGCAG-GCC--CGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 20496 0.66 0.369656
Target:  5'- cCGUGUucggucgggGCUUUCCGcugccCCGGGaUCGGCCUg -3'
miRNA:   3'- -GCACG---------CGAAGGGCa----GGCCC-GGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 38836 0.66 0.36145
Target:  5'- --cGCGaacacgCUCGUgCCGGGCCGcuCCCa -3'
miRNA:   3'- gcaCGCgaa---GGGCA-GGCCCGGCu-GGG- -5'
26310 3' -62.1 NC_005345.2 + 6193 0.66 0.354977
Target:  5'- uCGUGCGCgugccgcccggCCCGUCCGcgaggcucuugcuccGGCUGGuCgCCg -3'
miRNA:   3'- -GCACGCGaa---------GGGCAGGC---------------CCGGCU-G-GG- -5'
26310 3' -62.1 NC_005345.2 + 41288 0.66 0.353372
Target:  5'- gGUGUGCUggggCCGcCuCGGuGCCGGCgCCg -3'
miRNA:   3'- gCACGCGAag--GGCaG-GCC-CGGCUG-GG- -5'
26310 3' -62.1 NC_005345.2 + 20565 0.66 0.353372
Target:  5'- gGUGUGCggucggucacaUUCCCGggcccaaaUCCGGGgCCGGCg- -3'
miRNA:   3'- gCACGCG-----------AAGGGC--------AGGCCC-GGCUGgg -5'
26310 3' -62.1 NC_005345.2 + 17907 0.66 0.352571
Target:  5'- aGUGCGCacccgacCCCGgacccgCCGuacacccGGCCGcACCCg -3'
miRNA:   3'- gCACGCGaa-----GGGCa-----GGC-------CCGGC-UGGG- -5'
26310 3' -62.1 NC_005345.2 + 41205 0.67 0.345422
Target:  5'- uGUGCGCgagcgaCCCGaUCCGGuaagCGAUCCg -3'
miRNA:   3'- gCACGCGaa----GGGC-AGGCCcg--GCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 32199 0.67 0.345422
Target:  5'- gGUGcCGCaggcgUCUCGUCgaGcGGCCGGCCg -3'
miRNA:   3'- gCAC-GCGa----AGGGCAGg-C-CCGGCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.