miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26310 3' -62.1 NC_005345.2 + 1945 0.68 0.273059
Target:  5'- gGUGCGaaugcaCgUGUCCGGGuCCGGCuCCg -3'
miRNA:   3'- gCACGCgaa---GgGCAGGCCC-GGCUG-GG- -5'
26310 3' -62.1 NC_005345.2 + 4932 0.7 0.196784
Target:  5'- aCGUGCGC-UCCgG-CCGGGUggcggucacggaGACCCa -3'
miRNA:   3'- -GCACGCGaAGGgCaGGCCCGg-----------CUGGG- -5'
26310 3' -62.1 NC_005345.2 + 5779 0.69 0.241685
Target:  5'- gGUGCucgGCgUgCCGUaCCcGGCCGACCCc -3'
miRNA:   3'- gCACG---CGaAgGGCA-GGcCCGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 6193 0.66 0.354977
Target:  5'- uCGUGCGCgugccgcccggCCCGUCCGcgaggcucuugcuccGGCUGGuCgCCg -3'
miRNA:   3'- -GCACGCGaa---------GGGCAGGC---------------CCGGCU-G-GG- -5'
26310 3' -62.1 NC_005345.2 + 6288 0.68 0.285812
Target:  5'- aCGUGCGgggccgcCUucaUCCCGgCCGGGuuCCGGCCg -3'
miRNA:   3'- -GCACGC-------GA---AGGGCaGGCCC--GGCUGGg -5'
26310 3' -62.1 NC_005345.2 + 8699 0.76 0.082637
Target:  5'- aCGUGgGCggCCCGgCUGuGGCCGACUCg -3'
miRNA:   3'- -GCACgCGaaGGGCaGGC-CCGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 9058 0.66 0.398494
Target:  5'- uCGUGCaggUCCgCGacuuuaUCCGGGCCGccgucgccggcgaccGCCCg -3'
miRNA:   3'- -GCACGcgaAGG-GC------AGGCCCGGC---------------UGGG- -5'
26310 3' -62.1 NC_005345.2 + 9904 1.12 0.000148
Target:  5'- aCGUGCGCUUCCCGUCCGGGCCGACCCg -3'
miRNA:   3'- -GCACGCGAAGGGCAGGCCCGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 11261 0.7 0.213372
Target:  5'- cCGUGacgggcaccgcCGCga-CCGUCCGGGCCuGAgCCu -3'
miRNA:   3'- -GCAC-----------GCGaagGGCAGGCCCGG-CUgGG- -5'
26310 3' -62.1 NC_005345.2 + 14372 0.68 0.273059
Target:  5'- cCG-GCGCagCUCGgcgaccggCCGGuGCCGAUCCg -3'
miRNA:   3'- -GCaCGCGaaGGGCa-------GGCC-CGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 14671 0.69 0.230001
Target:  5'- cCGgGCgGCgUCgCCGaugCCGGGCCGGCCg -3'
miRNA:   3'- -GCaCG-CGaAG-GGCa--GGCCCGGCUGGg -5'
26310 3' -62.1 NC_005345.2 + 14797 0.68 0.293407
Target:  5'- gGUGCGCUUCgaCGUCgagcggCGGGCgCGgguguggucgacGCCCg -3'
miRNA:   3'- gCACGCGAAGg-GCAG------GCCCG-GC------------UGGG- -5'
26310 3' -62.1 NC_005345.2 + 15044 0.66 0.369656
Target:  5'- uCGgcgGCGaugUCgCCGUCgCGGgcGCCGGCCUg -3'
miRNA:   3'- -GCa--CGCga-AG-GGCAG-GCC--CGGCUGGG- -5'
26310 3' -62.1 NC_005345.2 + 15783 0.72 0.148881
Target:  5'- uGUGcCGCccUCCCGUCCGGugugggcggcacGCCGGCUa -3'
miRNA:   3'- gCAC-GCGa-AGGGCAGGCC------------CGGCUGGg -5'
26310 3' -62.1 NC_005345.2 + 16836 0.66 0.395027
Target:  5'- aCG-GCGCUUCUUcaCCGcGCCGuCCCg -3'
miRNA:   3'- -GCaCGCGAAGGGcaGGCcCGGCuGGG- -5'
26310 3' -62.1 NC_005345.2 + 17046 0.69 0.260133
Target:  5'- --cGCGCUgCCCGagcCCGaGGUCGaACCCg -3'
miRNA:   3'- gcaCGCGAaGGGCa--GGC-CCGGC-UGGG- -5'
26310 3' -62.1 NC_005345.2 + 17827 0.73 0.134005
Target:  5'- gCGUGCccCUUCCCGcCCGGccGCCgGGCCCc -3'
miRNA:   3'- -GCACGc-GAAGGGCaGGCC--CGG-CUGGG- -5'
26310 3' -62.1 NC_005345.2 + 17907 0.66 0.352571
Target:  5'- aGUGCGCacccgacCCCGgacccgCCGuacacccGGCCGcACCCg -3'
miRNA:   3'- gCACGCGaa-----GGGCa-----GGC-------CCGGC-UGGG- -5'
26310 3' -62.1 NC_005345.2 + 17958 0.66 0.377988
Target:  5'- gCGUcCGCUcggccgCCUG-CCGGGCCGcgGCCUc -3'
miRNA:   3'- -GCAcGCGAa-----GGGCaGGCCCGGC--UGGG- -5'
26310 3' -62.1 NC_005345.2 + 18440 0.68 0.300448
Target:  5'- uGUGgGCgaaccugcgCCCGUgguggaCCGGGUcccgCGACCCg -3'
miRNA:   3'- gCACgCGaa-------GGGCA------GGCCCG----GCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.