miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26311 3' -59.1 NC_005345.2 + 37290 0.65 0.530846
Target:  5'- --aCGUcGUGCAgGGCCgaugcccACGCCGuGGc -3'
miRNA:   3'- agaGCAuCGCGUgCCGG-------UGCGGCuCC- -5'
26311 3' -59.1 NC_005345.2 + 27118 0.65 0.530846
Target:  5'- gCUCGgcGCcacggcgGCAcCGGCCGgCGUCGAGc -3'
miRNA:   3'- aGAGCauCG-------CGU-GCCGGU-GCGGCUCc -5'
26311 3' -59.1 NC_005345.2 + 23545 0.65 0.529812
Target:  5'- gCUCGgcugUGGCGaggugaccuguCGGCCGCGuCCGAGc -3'
miRNA:   3'- aGAGC----AUCGCgu---------GCCGGUGC-GGCUCc -5'
26311 3' -59.1 NC_005345.2 + 38404 0.66 0.522596
Target:  5'- gCUCGgcGUcggcgacgacaucgaGCGCGGCCAuccggccgacgagcUGCCGcAGGa -3'
miRNA:   3'- aGAGCauCG---------------CGUGCCGGU--------------GCGGC-UCC- -5'
26311 3' -59.1 NC_005345.2 + 42445 0.66 0.521568
Target:  5'- -aUCGgcGUccccacGCGCGGCgauaucgACGCCGAGGc -3'
miRNA:   3'- agAGCauCG------CGUGCCGg------UGCGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 18561 0.66 0.521568
Target:  5'- gCUCGccgGGUGCGCGcCCAgCGUCGGGa -3'
miRNA:   3'- aGAGCa--UCGCGUGCcGGU-GCGGCUCc -5'
26311 3' -59.1 NC_005345.2 + 45568 0.66 0.521568
Target:  5'- -gUCGgGGCGgGcCGGUUGCGgCCGGGGg -3'
miRNA:   3'- agAGCaUCGCgU-GCCGGUGC-GGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 39525 0.66 0.521568
Target:  5'- gUCUCGg---GCACGGCgagcgCAUGCgCGAGGc -3'
miRNA:   3'- -AGAGCaucgCGUGCCG-----GUGCG-GCUCC- -5'
26311 3' -59.1 NC_005345.2 + 45829 0.66 0.521568
Target:  5'- --cCGUGacGUGCACGGCgGCGgCGcGGg -3'
miRNA:   3'- agaGCAU--CGCGUGCCGgUGCgGCuCC- -5'
26311 3' -59.1 NC_005345.2 + 33432 0.66 0.511333
Target:  5'- -gUCGUcccgAGCGCcCGGggauuCGCCGAGGa -3'
miRNA:   3'- agAGCA----UCGCGuGCCggu--GCGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 10026 0.66 0.511333
Target:  5'- aUUUCaacuGCGCAUgcgGGCUgcuCGCCGAGGa -3'
miRNA:   3'- -AGAGcau-CGCGUG---CCGGu--GCGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 30095 0.66 0.501183
Target:  5'- --cCGUAgGCGacCACGGCCaggGCGgCGAGGc -3'
miRNA:   3'- agaGCAU-CGC--GUGCCGG---UGCgGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 41303 0.66 0.491123
Target:  5'- cCUCGgugccGGCGCcgGCGGCuggacgcccuaCACGCCGAc- -3'
miRNA:   3'- aGAGCa----UCGCG--UGCCG-----------GUGCGGCUcc -5'
26311 3' -59.1 NC_005345.2 + 29278 0.66 0.491123
Target:  5'- -aUCGgcGCGCGguucgaGGUCGC-CCGAGGc -3'
miRNA:   3'- agAGCauCGCGUg-----CCGGUGcGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 47095 0.66 0.491123
Target:  5'- uUUUCGccgcGGCcCGCcgGGCCGCGCCGGGc -3'
miRNA:   3'- -AGAGCa---UCGcGUG--CCGGUGCGGCUCc -5'
26311 3' -59.1 NC_005345.2 + 21738 0.66 0.491123
Target:  5'- uUCUCGacGCgGUACcGCUGCGUCGAGGc -3'
miRNA:   3'- -AGAGCauCG-CGUGcCGGUGCGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 22992 0.66 0.491123
Target:  5'- aCUCG-GGCuCGgGGuCCuCGCCGAGGu -3'
miRNA:   3'- aGAGCaUCGcGUgCC-GGuGCGGCUCC- -5'
26311 3' -59.1 NC_005345.2 + 36267 0.66 0.481156
Target:  5'- -aUCGaGGCGaGCGGCCAC-CCGGcGGc -3'
miRNA:   3'- agAGCaUCGCgUGCCGGUGcGGCU-CC- -5'
26311 3' -59.1 NC_005345.2 + 44152 0.66 0.481156
Target:  5'- gCUCGUcaccauggcgAGCGCGuucguccgcauCGGCCGCGacaCCGcAGGa -3'
miRNA:   3'- aGAGCA----------UCGCGU-----------GCCGGUGC---GGC-UCC- -5'
26311 3' -59.1 NC_005345.2 + 1196 0.66 0.481156
Target:  5'- gCUCGgcaguccGGCcCGCgGGCCACGCCGcgcGGu -3'
miRNA:   3'- aGAGCa------UCGcGUG-CCGGUGCGGCu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.