miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26311 5' -55.8 NC_005345.2 + 43813 0.66 0.709863
Target:  5'- cUUCUCGGCGuCCGGGuCGaUCAGGc- -3'
miRNA:   3'- cAGGAGCUGCuGGUCCuGC-AGUCUcc -5'
26311 5' -55.8 NC_005345.2 + 29444 0.66 0.709863
Target:  5'- cGUCCUCGGCGuCgAGGcgguacuCGUCGGcccGGu -3'
miRNA:   3'- -CAGGAGCUGCuGgUCCu------GCAGUCu--CC- -5'
26311 5' -55.8 NC_005345.2 + 22281 0.66 0.709863
Target:  5'- aUCgUCGagGCGGCCGGGGCGaCGuGGGu -3'
miRNA:   3'- cAGgAGC--UGCUGGUCCUGCaGUcUCC- -5'
26311 5' -55.8 NC_005345.2 + 4280 0.66 0.709863
Target:  5'- -gCCUCGcgacGCGGCCgccgcGGGGCGccUCGGAGa -3'
miRNA:   3'- caGGAGC----UGCUGG-----UCCUGC--AGUCUCc -5'
26311 5' -55.8 NC_005345.2 + 39311 0.66 0.699186
Target:  5'- -aCCUCuGACGuCCuGGuCGUC-GAGGa -3'
miRNA:   3'- caGGAG-CUGCuGGuCCuGCAGuCUCC- -5'
26311 5' -55.8 NC_005345.2 + 17607 0.66 0.699186
Target:  5'- cUCCUCGcuCGACCcccagcaauGGACGUC-GAGa -3'
miRNA:   3'- cAGGAGCu-GCUGGu--------CCUGCAGuCUCc -5'
26311 5' -55.8 NC_005345.2 + 23754 0.66 0.688445
Target:  5'- -gCCUCGACGGCgAGGccggcggcgaucGCGUC-GAGc -3'
miRNA:   3'- caGGAGCUGCUGgUCC------------UGCAGuCUCc -5'
26311 5' -55.8 NC_005345.2 + 36021 0.66 0.688445
Target:  5'- -cCCUUGACGcACgGcGGGCGUUcGAGGu -3'
miRNA:   3'- caGGAGCUGC-UGgU-CCUGCAGuCUCC- -5'
26311 5' -55.8 NC_005345.2 + 39389 0.66 0.685212
Target:  5'- -gCCUCGGCGGcgcaaucgccgugcCCGGGAgCGUCGGcgcGGu -3'
miRNA:   3'- caGGAGCUGCU--------------GGUCCU-GCAGUCu--CC- -5'
26311 5' -55.8 NC_005345.2 + 28321 0.66 0.677652
Target:  5'- -gCgaCGACGACCAGGACGaCGacGAGc -3'
miRNA:   3'- caGgaGCUGCUGGUCCUGCaGU--CUCc -5'
26311 5' -55.8 NC_005345.2 + 26096 0.66 0.677652
Target:  5'- aUCCgcaGGCGuACCGGGuguucgcuaGCGUCgAGGGGg -3'
miRNA:   3'- cAGGag-CUGC-UGGUCC---------UGCAG-UCUCC- -5'
26311 5' -55.8 NC_005345.2 + 47704 0.66 0.671155
Target:  5'- aUCCgguaCGACGACCccgugccgucggacuGGGACGaCgAGGGGa -3'
miRNA:   3'- cAGGa---GCUGCUGG---------------UCCUGCaG-UCUCC- -5'
26311 5' -55.8 NC_005345.2 + 5436 0.66 0.666816
Target:  5'- uUCUUCGGCGGcgcCCGGGuCGgccgUAGGGGc -3'
miRNA:   3'- cAGGAGCUGCU---GGUCCuGCa---GUCUCC- -5'
26311 5' -55.8 NC_005345.2 + 36397 0.67 0.655948
Target:  5'- cGUCUgCcGCGGCCGGGugGcgaUCAGAuGGg -3'
miRNA:   3'- -CAGGaGcUGCUGGUCCugC---AGUCU-CC- -5'
26311 5' -55.8 NC_005345.2 + 22196 0.67 0.645058
Target:  5'- cGUCCUCGACGGggaCGGGAuCGUCu---- -3'
miRNA:   3'- -CAGGAGCUGCUg--GUCCU-GCAGucucc -5'
26311 5' -55.8 NC_005345.2 + 17748 0.67 0.634157
Target:  5'- -gCCcCGAgCGACCAGGACGgcacgCAGGu- -3'
miRNA:   3'- caGGaGCU-GCUGGUCCUGCa----GUCUcc -5'
26311 5' -55.8 NC_005345.2 + 6678 0.67 0.619985
Target:  5'- cUCCUCGACGacgGCCucGGCGUCGauaucgccgcgcguGGGGa -3'
miRNA:   3'- cAGGAGCUGC---UGGucCUGCAGU--------------CUCC- -5'
26311 5' -55.8 NC_005345.2 + 31318 0.67 0.612359
Target:  5'- -gCC-CGGCGGCCGGG-CGggaAGGGGc -3'
miRNA:   3'- caGGaGCUGCUGGUCCuGCag-UCUCC- -5'
26311 5' -55.8 NC_005345.2 + 38385 0.67 0.601481
Target:  5'- -gUCUCGACGGCCGGcaggggcucGGCGUCGGcGa -3'
miRNA:   3'- caGGAGCUGCUGGUC---------CUGCAGUCuCc -5'
26311 5' -55.8 NC_005345.2 + 34669 0.67 0.601481
Target:  5'- -aCCagUCGGCGuaguCgAGGGCGUCGGGGa -3'
miRNA:   3'- caGG--AGCUGCu---GgUCCUGCAGUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.