Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 20919 | 0.67 | 0.601481 |
Target: 5'- cGUCgUCGACGuACCGGugcagguuGAUGUCGucGAGGa -3' miRNA: 3'- -CAGgAGCUGC-UGGUC--------CUGCAGU--CUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 36110 | 0.68 | 0.594966 |
Target: 5'- gGUCCUCGACGcgGCCaagucgcucuucggcGGGuCcUCAGGGGc -3' miRNA: 3'- -CAGGAGCUGC--UGG---------------UCCuGcAGUCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 19133 | 0.68 | 0.590628 |
Target: 5'- aUCCgcUCGGCGACCucggccGGGACGUCGucgccGGGc -3' miRNA: 3'- cAGG--AGCUGCUGG------UCCUGCAGUc----UCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 21645 | 0.68 | 0.590628 |
Target: 5'- aUCCUCaGCGGCUcGGGCGgggUGGGGGu -3' miRNA: 3'- cAGGAGcUGCUGGuCCUGCa--GUCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 34961 | 0.68 | 0.547641 |
Target: 5'- -aCCUCGGCGGcguCCuGGuCGUC-GAGGg -3' miRNA: 3'- caGGAGCUGCU---GGuCCuGCAGuCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 1048 | 0.68 | 0.547641 |
Target: 5'- -aCCUCGACGAgccucuuuccaUCAGGACGgaAGAGa -3' miRNA: 3'- caGGAGCUGCU-----------GGUCCUGCagUCUCc -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 28605 | 0.69 | 0.516057 |
Target: 5'- -aCCUCGACGuucaccGCCGGGACGcacuaccCGGaAGGg -3' miRNA: 3'- caGGAGCUGC------UGGUCCUGCa------GUC-UCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 14656 | 0.69 | 0.516057 |
Target: 5'- cGUCCUCGGCaccGGCCGGGcgGCGUCGc--- -3' miRNA: 3'- -CAGGAGCUG---CUGGUCC--UGCAGUcucc -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 28214 | 0.7 | 0.475151 |
Target: 5'- cGUCCUCGACGAcaucaaccugcaCCGGuACGUCGacgacgacggcGAGGu -3' miRNA: 3'- -CAGGAGCUGCU------------GGUCcUGCAGU-----------CUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 26352 | 0.7 | 0.465176 |
Target: 5'- cGUCC---GCGGUguGGGCGUCGGAGGg -3' miRNA: 3'- -CAGGagcUGCUGguCCUGCAGUCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 35057 | 0.7 | 0.445561 |
Target: 5'- uGUUCUCGGCGAUCuGGACGgccgCGaAGGu -3' miRNA: 3'- -CAGGAGCUGCUGGuCCUGCa---GUcUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 7239 | 0.7 | 0.435928 |
Target: 5'- cGUCggCGACGACCAGGGCGaCGacGAGc -3' miRNA: 3'- -CAGgaGCUGCUGGUCCUGCaGU--CUCc -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 15708 | 0.7 | 0.426416 |
Target: 5'- gGUCCUCGGCGAaucCCcGGGCGcUCGGGa- -3' miRNA: 3'- -CAGGAGCUGCU---GGuCCUGC-AGUCUcc -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 26269 | 0.71 | 0.407769 |
Target: 5'- cUCgUCGACGACCAGGACGa------ -3' miRNA: 3'- cAGgAGCUGCUGGUCCUGCagucucc -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 8229 | 0.71 | 0.380777 |
Target: 5'- uGUCCggguaGACGACCcgcAGGACGUCGccGGg -3' miRNA: 3'- -CAGGag---CUGCUGG---UCCUGCAGUcuCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 22615 | 0.71 | 0.380777 |
Target: 5'- -cCUUCGccACGugCAGGAUGUC-GAGGg -3' miRNA: 3'- caGGAGC--UGCugGUCCUGCAGuCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 45159 | 0.72 | 0.372048 |
Target: 5'- -cUCUCGACGAgCGGGgacACGUC-GAGGg -3' miRNA: 3'- caGGAGCUGCUgGUCC---UGCAGuCUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 27983 | 0.72 | 0.363457 |
Target: 5'- -gCCgUCGACGGgCGGGGCGUCGcguagggcgucGAGGa -3' miRNA: 3'- caGG-AGCUGCUgGUCCUGCAGU-----------CUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 12846 | 0.72 | 0.330486 |
Target: 5'- -aCCggCGAgGACCGGuGACGUCGuGGGGg -3' miRNA: 3'- caGGa-GCUgCUGGUC-CUGCAGU-CUCC- -5' |
|||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 32984 | 0.74 | 0.264544 |
Target: 5'- aGUCCUCGgcgcagGCGGCCGGGGUGgCGGGGGc -3' miRNA: 3'- -CAGGAGC------UGCUGGUCCUGCaGUCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home