Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 10507 | 0.74 | 0.251422 |
Target: 5'- -cCCUCGACGGgCAGGACGggaucgCcGAGGc -3' miRNA: 3'- caGGAGCUGCUgGUCCUGCa-----GuCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 7353 | 0.77 | 0.164917 |
Target: 5'- -gUCUCGACGuCCGGGGCGUCGGuGa -3' miRNA: 3'- caGGAGCUGCuGGUCCUGCAGUCuCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 14184 | 0.86 | 0.040118 |
Target: 5'- -cCCUCGACGACCAGGACGcCGccGAGGu -3' miRNA: 3'- caGGAGCUGCUGGUCCUGCaGU--CUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 9835 | 1.1 | 0.000818 |
Target: 5'- aGUCCUCGACGACCAGGACGUCAGAGGu -3' miRNA: 3'- -CAGGAGCUGCUGGUCCUGCAGUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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