miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26311 5' -55.8 NC_005345.2 + 14184 0.86 0.040118
Target:  5'- -cCCUCGACGACCAGGACGcCGccGAGGu -3'
miRNA:   3'- caGGAGCUGCUGGUCCUGCaGU--CUCC- -5'
26311 5' -55.8 NC_005345.2 + 22196 0.67 0.645058
Target:  5'- cGUCCUCGACGGggaCGGGAuCGUCu---- -3'
miRNA:   3'- -CAGGAGCUGCUg--GUCCU-GCAGucucc -5'
26311 5' -55.8 NC_005345.2 + 28605 0.69 0.516057
Target:  5'- -aCCUCGACGuucaccGCCGGGACGcacuaccCGGaAGGg -3'
miRNA:   3'- caGGAGCUGC------UGGUCCUGCa------GUC-UCC- -5'
26311 5' -55.8 NC_005345.2 + 14656 0.69 0.516057
Target:  5'- cGUCCUCGGCaccGGCCGGGcgGCGUCGc--- -3'
miRNA:   3'- -CAGGAGCUG---CUGGUCC--UGCAGUcucc -5'
26311 5' -55.8 NC_005345.2 + 26352 0.7 0.465176
Target:  5'- cGUCC---GCGGUguGGGCGUCGGAGGg -3'
miRNA:   3'- -CAGGagcUGCUGguCCUGCAGUCUCC- -5'
26311 5' -55.8 NC_005345.2 + 35057 0.7 0.445561
Target:  5'- uGUUCUCGGCGAUCuGGACGgccgCGaAGGu -3'
miRNA:   3'- -CAGGAGCUGCUGGuCCUGCa---GUcUCC- -5'
26311 5' -55.8 NC_005345.2 + 22281 0.66 0.709863
Target:  5'- aUCgUCGagGCGGCCGGGGCGaCGuGGGu -3'
miRNA:   3'- cAGgAGC--UGCUGGUCCUGCaGUcUCC- -5'
26311 5' -55.8 NC_005345.2 + 4280 0.66 0.709863
Target:  5'- -gCCUCGcgacGCGGCCgccgcGGGGCGccUCGGAGa -3'
miRNA:   3'- caGGAGC----UGCUGG-----UCCUGC--AGUCUCc -5'
26311 5' -55.8 NC_005345.2 + 47704 0.66 0.671155
Target:  5'- aUCCgguaCGACGACCccgugccgucggacuGGGACGaCgAGGGGa -3'
miRNA:   3'- cAGGa---GCUGCUGG---------------UCCUGCaG-UCUCC- -5'
26311 5' -55.8 NC_005345.2 + 36110 0.68 0.594966
Target:  5'- gGUCCUCGACGcgGCCaagucgcucuucggcGGGuCcUCAGGGGc -3'
miRNA:   3'- -CAGGAGCUGC--UGG---------------UCCuGcAGUCUCC- -5'
26311 5' -55.8 NC_005345.2 + 28214 0.7 0.475151
Target:  5'- cGUCCUCGACGAcaucaaccugcaCCGGuACGUCGacgacgacggcGAGGu -3'
miRNA:   3'- -CAGGAGCUGCU------------GGUCcUGCAGU-----------CUCC- -5'
26311 5' -55.8 NC_005345.2 + 10507 0.74 0.251422
Target:  5'- -cCCUCGACGGgCAGGACGggaucgCcGAGGc -3'
miRNA:   3'- caGGAGCUGCUgGUCCUGCa-----GuCUCC- -5'
26311 5' -55.8 NC_005345.2 + 28321 0.66 0.677652
Target:  5'- -gCgaCGACGACCAGGACGaCGacGAGc -3'
miRNA:   3'- caGgaGCUGCUGGUCCUGCaGU--CUCc -5'
26311 5' -55.8 NC_005345.2 + 12846 0.72 0.330486
Target:  5'- -aCCggCGAgGACCGGuGACGUCGuGGGGg -3'
miRNA:   3'- caGGa-GCUgCUGGUC-CUGCAGU-CUCC- -5'
26311 5' -55.8 NC_005345.2 + 21645 0.68 0.590628
Target:  5'- aUCCUCaGCGGCUcGGGCGgggUGGGGGu -3'
miRNA:   3'- cAGGAGcUGCUGGuCCUGCa--GUCUCC- -5'
26311 5' -55.8 NC_005345.2 + 39311 0.66 0.699186
Target:  5'- -aCCUCuGACGuCCuGGuCGUC-GAGGa -3'
miRNA:   3'- caGGAG-CUGCuGGuCCuGCAGuCUCC- -5'
26311 5' -55.8 NC_005345.2 + 7239 0.7 0.435928
Target:  5'- cGUCggCGACGACCAGGGCGaCGacGAGc -3'
miRNA:   3'- -CAGgaGCUGCUGGUCCUGCaGU--CUCc -5'
26311 5' -55.8 NC_005345.2 + 5436 0.66 0.666816
Target:  5'- uUCUUCGGCGGcgcCCGGGuCGgccgUAGGGGc -3'
miRNA:   3'- cAGGAGCUGCU---GGUCCuGCa---GUCUCC- -5'
26311 5' -55.8 NC_005345.2 + 19133 0.68 0.590628
Target:  5'- aUCCgcUCGGCGACCucggccGGGACGUCGucgccGGGc -3'
miRNA:   3'- cAGG--AGCUGCUGG------UCCUGCAGUc----UCC- -5'
26311 5' -55.8 NC_005345.2 + 34669 0.67 0.601481
Target:  5'- -aCCagUCGGCGuaguCgAGGGCGUCGGGGa -3'
miRNA:   3'- caGG--AGCUGCu---GgUCCUGCAGUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.