Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26311 | 5' | -55.8 | NC_005345.2 | + | 22615 | 0.71 | 0.380777 |
Target: 5'- -cCUUCGccACGugCAGGAUGUC-GAGGg -3' miRNA: 3'- caGGAGC--UGCugGUCCUGCAGuCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 38385 | 0.67 | 0.601481 |
Target: 5'- -gUCUCGACGGCCGGcaggggcucGGCGUCGGcGa -3' miRNA: 3'- caGGAGCUGCUGGUC---------CUGCAGUCuCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 34669 | 0.67 | 0.601481 |
Target: 5'- -aCCagUCGGCGuaguCgAGGGCGUCGGGGa -3' miRNA: 3'- caGG--AGCUGCu---GgUCCUGCAGUCUCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 19133 | 0.68 | 0.590628 |
Target: 5'- aUCCgcUCGGCGACCucggccGGGACGUCGucgccGGGc -3' miRNA: 3'- cAGG--AGCUGCUGG------UCCUGCAGUc----UCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 1048 | 0.68 | 0.547641 |
Target: 5'- -aCCUCGACGAgccucuuuccaUCAGGACGgaAGAGa -3' miRNA: 3'- caGGAGCUGCU-----------GGUCCUGCagUCUCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 34961 | 0.68 | 0.547641 |
Target: 5'- -aCCUCGGCGGcguCCuGGuCGUC-GAGGg -3' miRNA: 3'- caGGAGCUGCU---GGuCCuGCAGuCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 15708 | 0.7 | 0.426416 |
Target: 5'- gGUCCUCGGCGAaucCCcGGGCGcUCGGGa- -3' miRNA: 3'- -CAGGAGCUGCU---GGuCCUGC-AGUCUcc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 26269 | 0.71 | 0.407769 |
Target: 5'- cUCgUCGACGACCAGGACGa------ -3' miRNA: 3'- cAGgAGCUGCUGGUCCUGCagucucc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 8229 | 0.71 | 0.380777 |
Target: 5'- uGUCCggguaGACGACCcgcAGGACGUCGccGGg -3' miRNA: 3'- -CAGGag---CUGCUGG---UCCUGCAGUcuCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 20919 | 0.67 | 0.601481 |
Target: 5'- cGUCgUCGACGuACCGGugcagguuGAUGUCGucGAGGa -3' miRNA: 3'- -CAGgAGCUGC-UGGUC--------CUGCAGU--CUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 31318 | 0.67 | 0.612359 |
Target: 5'- -gCC-CGGCGGCCGGG-CGggaAGGGGc -3' miRNA: 3'- caGGaGCUGCUGGUCCuGCag-UCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 6678 | 0.67 | 0.619985 |
Target: 5'- cUCCUCGACGacgGCCucGGCGUCGauaucgccgcgcguGGGGa -3' miRNA: 3'- cAGGAGCUGC---UGGucCUGCAGU--------------CUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 29444 | 0.66 | 0.709863 |
Target: 5'- cGUCCUCGGCGuCgAGGcgguacuCGUCGGcccGGu -3' miRNA: 3'- -CAGGAGCUGCuGgUCCu------GCAGUCu--CC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 17607 | 0.66 | 0.699186 |
Target: 5'- cUCCUCGcuCGACCcccagcaauGGACGUC-GAGa -3' miRNA: 3'- cAGGAGCu-GCUGGu--------CCUGCAGuCUCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 36021 | 0.66 | 0.688445 |
Target: 5'- -cCCUUGACGcACgGcGGGCGUUcGAGGu -3' miRNA: 3'- caGGAGCUGC-UGgU-CCUGCAGuCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 23754 | 0.66 | 0.688445 |
Target: 5'- -gCCUCGACGGCgAGGccggcggcgaucGCGUC-GAGc -3' miRNA: 3'- caGGAGCUGCUGgUCC------------UGCAGuCUCc -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 39389 | 0.66 | 0.685212 |
Target: 5'- -gCCUCGGCGGcgcaaucgccgugcCCGGGAgCGUCGGcgcGGu -3' miRNA: 3'- caGGAGCUGCU--------------GGUCCU-GCAGUCu--CC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 26096 | 0.66 | 0.677652 |
Target: 5'- aUCCgcaGGCGuACCGGGuguucgcuaGCGUCgAGGGGg -3' miRNA: 3'- cAGGag-CUGC-UGGUCC---------UGCAG-UCUCC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 36397 | 0.67 | 0.655948 |
Target: 5'- cGUCUgCcGCGGCCGGGugGcgaUCAGAuGGg -3' miRNA: 3'- -CAGGaGcUGCUGGUCCugC---AGUCU-CC- -5' |
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26311 | 5' | -55.8 | NC_005345.2 | + | 17748 | 0.67 | 0.634157 |
Target: 5'- -gCCcCGAgCGACCAGGACGgcacgCAGGu- -3' miRNA: 3'- caGGaGCU-GCUGGUCCUGCa----GUCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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