miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26312 3' -57.7 NC_005345.2 + 25777 0.66 0.52971
Target:  5'- uCGGGCAGCUcgGGCGCcucGGCc------ -3'
miRNA:   3'- -GCCCGUUGGuaCCGCG---CCGucaacuu -5'
26312 3' -57.7 NC_005345.2 + 7502 0.66 0.528639
Target:  5'- gCGGGCcGCCAUucGGUgggcgugcugccgGCGGCGGUcgUGGu -3'
miRNA:   3'- -GCCCGuUGGUA--CCG-------------CGCCGUCA--ACUu -5'
26312 3' -57.7 NC_005345.2 + 48575 0.66 0.51904
Target:  5'- gCGGGC-GCCgAUGaGCucGCGGCGGgcGAGg -3'
miRNA:   3'- -GCCCGuUGG-UAC-CG--CGCCGUCaaCUU- -5'
26312 3' -57.7 NC_005345.2 + 6533 0.66 0.51904
Target:  5'- gGGGCGggGCgG-GGCGgGGCGGUgggGGAc -3'
miRNA:   3'- gCCCGU--UGgUaCCGCgCCGUCAa--CUU- -5'
26312 3' -57.7 NC_005345.2 + 30214 0.66 0.497965
Target:  5'- cCGGGCGACgAUcGCGCauccGGCGG-UGAGc -3'
miRNA:   3'- -GCCCGUUGgUAcCGCG----CCGUCaACUU- -5'
26312 3' -57.7 NC_005345.2 + 31451 0.66 0.497965
Target:  5'- gCGGGUGcgaggcGCCggGGUGCGGguG-UGAGg -3'
miRNA:   3'- -GCCCGU------UGGuaCCGCGCCguCaACUU- -5'
26312 3' -57.7 NC_005345.2 + 35915 0.66 0.497965
Target:  5'- uCGGGUGGCUcgGGaCGCGGCGaa-GAAg -3'
miRNA:   3'- -GCCCGUUGGuaCC-GCGCCGUcaaCUU- -5'
26312 3' -57.7 NC_005345.2 + 41296 0.66 0.497965
Target:  5'- gGGGCcGCCucggugccGGCGcCGGCGGcUGGAc -3'
miRNA:   3'- gCCCGuUGGua------CCGC-GCCGUCaACUU- -5'
26312 3' -57.7 NC_005345.2 + 17260 0.66 0.477281
Target:  5'- cCGGGCGGCa--GGCGCcGCGGUccUGGu -3'
miRNA:   3'- -GCCCGUUGguaCCGCGcCGUCA--ACUu -5'
26312 3' -57.7 NC_005345.2 + 29507 0.66 0.477281
Target:  5'- -aGGCGGCCGUGucGCacauGCGGCAGUgcgagGAAg -3'
miRNA:   3'- gcCCGUUGGUAC--CG----CGCCGUCAa----CUU- -5'
26312 3' -57.7 NC_005345.2 + 14690 0.67 0.467099
Target:  5'- cCGGGCcggccgugcCCGUGGUGUGGCGGc-GAGc -3'
miRNA:   3'- -GCCCGuu-------GGUACCGCGCCGUCaaCUU- -5'
26312 3' -57.7 NC_005345.2 + 3384 0.67 0.467099
Target:  5'- uGGGCGGCgAgguccGGCGCGGCAu----- -3'
miRNA:   3'- gCCCGUUGgUa----CCGCGCCGUcaacuu -5'
26312 3' -57.7 NC_005345.2 + 29985 0.67 0.467099
Target:  5'- aCGGGCAGCCGUacgGGCcCGGCGa----- -3'
miRNA:   3'- -GCCCGUUGGUA---CCGcGCCGUcaacuu -5'
26312 3' -57.7 NC_005345.2 + 3418 0.67 0.467099
Target:  5'- aGaGGCGGCg--GGCGCGGCGGcgGGc -3'
miRNA:   3'- gC-CCGUUGguaCCGCGCCGUCaaCUu -5'
26312 3' -57.7 NC_005345.2 + 33369 0.67 0.467099
Target:  5'- gGGGUgggGGCgGUGGCGCGGCcccgGAu -3'
miRNA:   3'- gCCCG---UUGgUACCGCGCCGucaaCUu -5'
26312 3' -57.7 NC_005345.2 + 35135 0.67 0.44708
Target:  5'- gCGGGCGuucuCCuGUGGCGCGuaGGgUGAu -3'
miRNA:   3'- -GCCCGUu---GG-UACCGCGCcgUCaACUu -5'
26312 3' -57.7 NC_005345.2 + 33380 0.67 0.44708
Target:  5'- aGGGCGGCaCAUGGCuacaGCcGCGGUcGAGg -3'
miRNA:   3'- gCCCGUUG-GUACCG----CGcCGUCAaCUU- -5'
26312 3' -57.7 NC_005345.2 + 19745 0.67 0.437251
Target:  5'- gCGaGGCGACCGaGGCcgagGCGGCGGccGAGc -3'
miRNA:   3'- -GC-CCGUUGGUaCCG----CGCCGUCaaCUU- -5'
26312 3' -57.7 NC_005345.2 + 8829 0.67 0.417972
Target:  5'- cCGGGCucgucuGCCGcGGCuGCGGCAcggUGAAc -3'
miRNA:   3'- -GCCCGu-----UGGUaCCG-CGCCGUca-ACUU- -5'
26312 3' -57.7 NC_005345.2 + 4280 0.68 0.408529
Target:  5'- gCGGGCAGCUcgGGCucggGCuGCGGUUcGAc -3'
miRNA:   3'- -GCCCGUUGGuaCCG----CGcCGUCAA-CUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.