miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26313 5' -58 NC_005345.2 + 37923 0.66 0.562131
Target:  5'- gUCAGCGCGUUCGcggacgcCUCGaCG-CCGa -3'
miRNA:   3'- aAGUCGCGCAGGCa------GAGCaGCaGGCa -5'
26313 5' -58 NC_005345.2 + 5692 0.66 0.56213
Target:  5'- gUgAGCGCGgUCGUCUUGa-GUCCGUc -3'
miRNA:   3'- aAgUCGCGCaGGCAGAGCagCAGGCA- -5'
26313 5' -58 NC_005345.2 + 989 0.66 0.551456
Target:  5'- aUgAGCucGUGUCCGgugUGUCGUCCGg -3'
miRNA:   3'- aAgUCG--CGCAGGCagaGCAGCAGGCa -5'
26313 5' -58 NC_005345.2 + 25503 0.66 0.53873
Target:  5'- gUCGGCGcCGUCCGcCUCGgcgaacaccaugCGcagCCGUg -3'
miRNA:   3'- aAGUCGC-GCAGGCaGAGCa-----------GCa--GGCA- -5'
26313 5' -58 NC_005345.2 + 13443 0.66 0.530302
Target:  5'- uUUCGGCGCGUCCGgcagCUUGcccaGaCCGa -3'
miRNA:   3'- -AAGUCGCGCAGGCa---GAGCag--CaGGCa -5'
26313 5' -58 NC_005345.2 + 24284 0.66 0.519836
Target:  5'- aUCAGCGCgGUCgCGUC-CGUCacgCCGc -3'
miRNA:   3'- aAGUCGCG-CAG-GCAGaGCAGca-GGCa -5'
26313 5' -58 NC_005345.2 + 39276 0.66 0.509452
Target:  5'- -gCGGCGCGUCgGgacugCUCGaccgCGUCCu- -3'
miRNA:   3'- aaGUCGCGCAGgCa----GAGCa---GCAGGca -5'
26313 5' -58 NC_005345.2 + 30143 0.67 0.488953
Target:  5'- -gCGGCGCGccacCCGUCgagGUCGUCCc- -3'
miRNA:   3'- aaGUCGCGCa---GGCAGag-CAGCAGGca -5'
26313 5' -58 NC_005345.2 + 20569 0.67 0.488953
Target:  5'- gUCaAGCGUGaccgacUCCGUCgCGUCGguUCCGUg -3'
miRNA:   3'- aAG-UCGCGC------AGGCAGaGCAGC--AGGCA- -5'
26313 5' -58 NC_005345.2 + 21465 0.68 0.439514
Target:  5'- gUCGGCGCGcCCGgucacgCggccggaaUGUCGUCCGg -3'
miRNA:   3'- aAGUCGCGCaGGCa-----Ga-------GCAGCAGGCa -5'
26313 5' -58 NC_005345.2 + 20812 0.68 0.402086
Target:  5'- -aCGGCGCGUgUCGcgCUCGUCGUCg-- -3'
miRNA:   3'- aaGUCGCGCA-GGCa-GAGCAGCAGgca -5'
26313 5' -58 NC_005345.2 + 43794 0.69 0.384147
Target:  5'- -gCAGCGCcucgcgaguGUCCuUCUCGgCGUCCGg -3'
miRNA:   3'- aaGUCGCG---------CAGGcAGAGCaGCAGGCa -5'
26313 5' -58 NC_005345.2 + 4012 0.69 0.349897
Target:  5'- -gCAGCGCGUCCG---CGUUGUCCc- -3'
miRNA:   3'- aaGUCGCGCAGGCagaGCAGCAGGca -5'
26313 5' -58 NC_005345.2 + 38374 0.7 0.32567
Target:  5'- -gCAGCGCGgCUGUCUCGaCGgCCGg -3'
miRNA:   3'- aaGUCGCGCaGGCAGAGCaGCaGGCa -5'
26313 5' -58 NC_005345.2 + 48056 0.7 0.302712
Target:  5'- -cCGGCGCGcaCCG-CUCGUCG-CCGUc -3'
miRNA:   3'- aaGUCGCGCa-GGCaGAGCAGCaGGCA- -5'
26313 5' -58 NC_005345.2 + 35404 0.71 0.26058
Target:  5'- aUCAGUGCcUCgaUGUCgUCGUCGUCCGg -3'
miRNA:   3'- aAGUCGCGcAG--GCAG-AGCAGCAGGCa -5'
26313 5' -58 NC_005345.2 + 21243 0.75 0.145652
Target:  5'- gUCGGCGuCGU-CGUCcuggUCGUCGUCCGUg -3'
miRNA:   3'- aAGUCGC-GCAgGCAG----AGCAGCAGGCA- -5'
26313 5' -58 NC_005345.2 + 9512 1.05 0.000912
Target:  5'- gUUCAGCGCGUCCGUCUCGUCGUCCGUg -3'
miRNA:   3'- -AAGUCGCGCAGGCAGAGCAGCAGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.