miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 22672 0.66 0.445535
Target:  5'- gGUCGGGCaGUCGcUCGuCGUgGCgGUg -3'
miRNA:   3'- -CGGCCCGgCAGC-AGCuGCAgCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 15314 0.66 0.445535
Target:  5'- cGCCcGGCUGUagGUCGguGCGUCgGCCGg- -3'
miRNA:   3'- -CGGcCCGGCAg-CAGC--UGCAG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 27851 0.66 0.436282
Target:  5'- -aCGGGCgG-CGUCGcuCGUCGUacuCGUCg -3'
miRNA:   3'- cgGCCCGgCaGCAGCu-GCAGCG---GCAG- -5'
26314 5' -61.3 NC_005345.2 + 3666 0.66 0.436282
Target:  5'- gGCCGGGaucgUGUCGUUugccggGugGUCGCCc-- -3'
miRNA:   3'- -CGGCCCg---GCAGCAG------CugCAGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 37268 0.66 0.436282
Target:  5'- gGUCGcGUCGUCGUCGAgGg-GCaCGUCg -3'
miRNA:   3'- -CGGCcCGGCAGCAGCUgCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 10786 0.66 0.435363
Target:  5'- uGCCGcuugcucGGCCGUCcgcaCGgauGCGUUGCCGUUc -3'
miRNA:   3'- -CGGC-------CCGGCAGca--GC---UGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 16363 0.66 0.427141
Target:  5'- gGCCGGcGCCG-CGgugaucgCGACGaUCGgguUCGUCg -3'
miRNA:   3'- -CGGCC-CGGCaGCa------GCUGC-AGC---GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35495 0.66 0.418114
Target:  5'- gGgCGGcgcGCUGcUCGUCGGCGcucacgccgCGCCGUCc -3'
miRNA:   3'- -CgGCC---CGGC-AGCAGCUGCa--------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35356 0.66 0.418114
Target:  5'- --aGGGgCGU-GUCGGgGcCGCCGUCg -3'
miRNA:   3'- cggCCCgGCAgCAGCUgCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 43545 0.66 0.418114
Target:  5'- cGCCGaGCuCGUCGcCGACaagcUCGCCGa- -3'
miRNA:   3'- -CGGCcCG-GCAGCaGCUGc---AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 35688 0.66 0.415428
Target:  5'- cGCCGGGuUCGUCgGUCugggcaagcugccgGACG-CGCCGa- -3'
miRNA:   3'- -CGGCCC-GGCAG-CAG--------------CUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 30161 0.66 0.412754
Target:  5'- cGCuCGGGCCGaggcUCGggcaUCGACGcguggcgcucguuccUCGCCGa- -3'
miRNA:   3'- -CG-GCCCGGC----AGC----AGCUGC---------------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 16130 0.66 0.40832
Target:  5'- cCCGcGGCCGagcccgaUCGUCGACGccccCGCCa-- -3'
miRNA:   3'- cGGC-CCGGC-------AGCAGCUGCa---GCGGcag -5'
26314 5' -61.3 NC_005345.2 + 47039 0.66 0.400414
Target:  5'- -gCGGcGCCGUC-UCGACGaCGCUGa- -3'
miRNA:   3'- cgGCC-CGGCAGcAGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 46819 0.66 0.400414
Target:  5'- cGCuCGGacGCCGagUCGUUGACGcacuUCGCCGa- -3'
miRNA:   3'- -CG-GCC--CGGC--AGCAGCUGC----AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 929 0.66 0.400414
Target:  5'- aCCGGcGUcaCGUCGUCGAgGUCGCg--- -3'
miRNA:   3'- cGGCC-CG--GCAGCAGCUgCAGCGgcag -5'
26314 5' -61.3 NC_005345.2 + 39202 0.66 0.400414
Target:  5'- cCCGGGCCGcggGUUGGCGa--CCGUCg -3'
miRNA:   3'- cGGCCCGGCag-CAGCUGCagcGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 14851 0.67 0.391744
Target:  5'- uGCCGGGCUGcagcgggCGcUCGACG-CgGCCGa- -3'
miRNA:   3'- -CGGCCCGGCa------GC-AGCUGCaG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 3463 0.67 0.391744
Target:  5'- cGCgCGGGCUGUCGgacaugccUCGACGUuaccCGCgCGa- -3'
miRNA:   3'- -CG-GCCCGGCAGC--------AGCUGCA----GCG-GCag -5'
26314 5' -61.3 NC_005345.2 + 44380 0.67 0.391744
Target:  5'- -aCGGGUCGcCGgCGAgGgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCaGCaGCUgCaGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.