Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26314 | 5' | -61.3 | NC_005345.2 | + | 14391 | 0.67 | 0.383198 |
Target: 5'- gGCCGGuGCCGaucCGgcugC-ACGUCGCCGa- -3' miRNA: 3'- -CGGCC-CGGCa--GCa---GcUGCAGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 9169 | 0.67 | 0.366482 |
Target: 5'- uGCaCGGGCCgGUCGugugcgagcugaUCGACGccggggUGCCGUa -3' miRNA: 3'- -CG-GCCCGG-CAGC------------AGCUGCa-----GCGGCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 43948 | 0.67 | 0.390025 |
Target: 5'- cGCCGGGCCGgccgugccgaugCGUgcagccCGGCGgcUCGCCcgacucGUCg -3' miRNA: 3'- -CGGCCCGGCa-----------GCA------GCUGC--AGCGG------CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 7960 | 0.67 | 0.350275 |
Target: 5'- gGCgGGGaucCCGUCgGUCGuCGUgucgUGCCGUCc -3' miRNA: 3'- -CGgCCC---GGCAG-CAGCuGCA----GCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 44380 | 0.67 | 0.391744 |
Target: 5'- -aCGGGUCGcCGgCGAgGgUGCCGUCg -3' miRNA: 3'- cgGCCCGGCaGCaGCUgCaGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 3463 | 0.67 | 0.391744 |
Target: 5'- cGCgCGGGCUGUCGgacaugccUCGACGUuaccCGCgCGa- -3' miRNA: 3'- -CG-GCCCGGCAGC--------AGCUGCA----GCG-GCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 11332 | 0.67 | 0.390884 |
Target: 5'- cCCGGGCCGUuccggcCGUUGgugccgagcagcaGCGucgcauugaguuUCGCCGUCc -3' miRNA: 3'- cGGCCCGGCA------GCAGC-------------UGC------------AGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 35561 | 0.67 | 0.382351 |
Target: 5'- cGgCGGGUCGagccacacgaucuUCGUCG-CGcCGCCGUg -3' miRNA: 3'- -CgGCCCGGC-------------AGCAGCuGCaGCGGCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 48180 | 0.67 | 0.374777 |
Target: 5'- uCCGGGCCGcCGUCaagGACGgcCGgCGUa -3' miRNA: 3'- cGGCCCGGCaGCAG---CUGCa-GCgGCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 29435 | 0.67 | 0.366482 |
Target: 5'- uGCgGGcGUCGUCcUCGGCGUCGaggcgguacUCGUCg -3' miRNA: 3'- -CGgCC-CGGCAGcAGCUGCAGC---------GGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 8694 | 0.67 | 0.366482 |
Target: 5'- -aCGGGuuGUCGcCGAUGUCgaacgugcgcggGCCGaUCg -3' miRNA: 3'- cgGCCCggCAGCaGCUGCAG------------CGGC-AG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 17975 | 0.67 | 0.366482 |
Target: 5'- uGCCGGGCCG-CGgccUCGAUcUC-CCGUg -3' miRNA: 3'- -CGGCCCGGCaGC---AGCUGcAGcGGCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 39904 | 0.67 | 0.361566 |
Target: 5'- gGCCGcaCCGUgGUCGcggcguacgacuugaGCGUCGCCGg- -3' miRNA: 3'- -CGGCccGGCAgCAGC---------------UGCAGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 44588 | 0.67 | 0.358315 |
Target: 5'- cUCGGGCagcaGUCGUacACGcUGCCGUCg -3' miRNA: 3'- cGGCCCGg---CAGCAgcUGCaGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 16360 | 0.67 | 0.358315 |
Target: 5'- cGCCGaGCa-UCGccgCGGCGUCGCCGcUCu -3' miRNA: 3'- -CGGCcCGgcAGCa--GCUGCAGCGGC-AG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 21451 | 0.67 | 0.350275 |
Target: 5'- uGCaGGGCUGccgUGUCGGCG-CGCCcgGUCa -3' miRNA: 3'- -CGgCCCGGCa--GCAGCUGCaGCGG--CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 27581 | 0.67 | 0.350275 |
Target: 5'- cGUCGGGCCGUC-UCGcgccaACGUgCGgCGUUc -3' miRNA: 3'- -CGGCCCGGCAGcAGC-----UGCA-GCgGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 19337 | 0.68 | 0.319414 |
Target: 5'- uGCCGGGCUGcUCGcCGggggcgagcGCGUaGUCGUCu -3' miRNA: 3'- -CGGCCCGGC-AGCaGC---------UGCAgCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 3903 | 0.68 | 0.319414 |
Target: 5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3' miRNA: 3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 29309 | 0.68 | 0.319414 |
Target: 5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3' miRNA: 3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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