miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 8884 1.11 0.000222
Target:  5'- gGCCGGGCCGUCGUCGACGUCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGCAGCAGCUGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 21218 0.82 0.033654
Target:  5'- cGCCGGuGUCGuccgugucggagUCGUCGGCGUCGUCGUCc -3'
miRNA:   3'- -CGGCC-CGGC------------AGCAGCUGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 26312 0.82 0.035293
Target:  5'- aCCGGGaugaCCGUCGUCGAucagccguucgugcCGUCGCCGUCc -3'
miRNA:   3'- cGGCCC----GGCAGCAGCU--------------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29964 0.8 0.044486
Target:  5'- cGUCGGGCuCGUCGUCGAggggcuCGUCGgCGUCc -3'
miRNA:   3'- -CGGCCCG-GCAGCAGCU------GCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35686 0.79 0.051114
Target:  5'- cGUCGGGCCacagcacgccGUCGgCGACGUCGCCGg- -3'
miRNA:   3'- -CGGCCCGG----------CAGCaGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 42474 0.79 0.051114
Target:  5'- cGCCGaGGCCGUCGUCGAgGagaUCGCCa-- -3'
miRNA:   3'- -CGGC-CCGGCAGCAGCUgC---AGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 20894 0.78 0.060341
Target:  5'- aUCGcGUCGUCGUCGACcUCGCCGUCg -3'
miRNA:   3'- cGGCcCGGCAGCAGCUGcAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 4643 0.78 0.067367
Target:  5'- uCCGGGCCGUCGccugcugugccUCGGcCGUCGCCuUCg -3'
miRNA:   3'- cGGCCCGGCAGC-----------AGCU-GCAGCGGcAG- -5'
26314 5' -61.3 NC_005345.2 + 10529 0.78 0.069243
Target:  5'- cGCCGaGGCCGaCGUCGAgaUCGCCGUg -3'
miRNA:   3'- -CGGC-CCGGCaGCAGCUgcAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 37057 0.78 0.069243
Target:  5'- gGCCGGcGgcgaCGUCGUCGAucUGUCGCUGUCg -3'
miRNA:   3'- -CGGCC-Cg---GCAGCAGCU--GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 21256 0.77 0.077263
Target:  5'- nCCuGGUCGUCGUcCGuguCGUCGCCGUCg -3'
miRNA:   3'- cGGcCCGGCAGCA-GCu--GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 41887 0.76 0.098676
Target:  5'- uCCGGGCUGUCGagcagcugcUCGuCGUCGCCugGUCg -3'
miRNA:   3'- cGGCCCGGCAGC---------AGCuGCAGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 36904 0.76 0.096044
Target:  5'- aGCCGGGCCugcUCGcUCGAC-UCGCgGUCa -3'
miRNA:   3'- -CGGCCCGGc--AGC-AGCUGcAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 33328 0.76 0.086168
Target:  5'- aGCuCGGGCCGUCGgcCGGaGUCGCCGa- -3'
miRNA:   3'- -CG-GCCCGGCAGCa-GCUgCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 20820 0.75 0.109898
Target:  5'- uGUCGcGCuCGUCGUCGuccuggucguCGUCGCCGUCg -3'
miRNA:   3'- -CGGCcCG-GCAGCAGCu---------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 9079 0.75 0.105272
Target:  5'- uCCGGGCCGcCGUCGccggcgaccgcccgcACGUCGCgGUg -3'
miRNA:   3'- cGGCCCGGCaGCAGC---------------UGCAGCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 5614 0.74 0.136007
Target:  5'- cGCCGGGCuCGUgGcCGACGcggugaUCGCCGa- -3'
miRNA:   3'- -CGGCCCG-GCAgCaGCUGC------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 19008 0.73 0.139647
Target:  5'- aGCgGGGCgG-CGccUCGACGUCGCCGcCc -3'
miRNA:   3'- -CGgCCCGgCaGC--AGCUGCAGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 2684 0.73 0.151106
Target:  5'- gGCCGcGGgCGUUGUCGAUGUgGgUGUCg -3'
miRNA:   3'- -CGGC-CCgGCAGCAGCUGCAgCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19066 0.72 0.167712
Target:  5'- gGCCgucucgGGGCCGugcUCGcCGAUGagcUCGCCGUCg -3'
miRNA:   3'- -CGG------CCCGGC---AGCaGCUGC---AGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.