miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 19066 0.72 0.167712
Target:  5'- gGCCgucucgGGGCCGugcUCGcCGAUGagcUCGCCGUCg -3'
miRNA:   3'- -CGG------CCCGGC---AGCaGCUGC---AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 33398 0.72 0.172112
Target:  5'- aGCCGcGGUCGagGUCGGCGUCggguacguaucgGUCGUCc -3'
miRNA:   3'- -CGGC-CCGGCagCAGCUGCAG------------CGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 6362 0.72 0.172112
Target:  5'- cGCCGGGuuGgccgCGgUGGCGUUGCgGUCc -3'
miRNA:   3'- -CGGCCCggCa---GCaGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 47109 0.72 0.176615
Target:  5'- cGCCGGGCCG-CGccgggcccgcUCGACGaggaCGCCGa- -3'
miRNA:   3'- -CGGCCCGGCaGC----------AGCUGCa---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 19164 0.72 0.177071
Target:  5'- cGCCGGGcCCGUacggcugccCGUCGACGUgcacguacgcgaucaGUCGUCg -3'
miRNA:   3'- -CGGCCC-GGCA---------GCAGCUGCAg--------------CGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18349 0.72 0.179829
Target:  5'- cCCGGGUCGagGUCGACcagucggucacgguGUUGCCGUa -3'
miRNA:   3'- cGGCCCGGCagCAGCUG--------------CAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 35004 0.72 0.181222
Target:  5'- -gCGGGCgGUCGgCGACGcUGCCGUg -3'
miRNA:   3'- cgGCCCGgCAGCaGCUGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 43760 0.72 0.181222
Target:  5'- cGCCGGGCCugaGUgGAC-UCGcCCGUCa -3'
miRNA:   3'- -CGGCCCGGcagCAgCUGcAGC-GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8122 0.72 0.183095
Target:  5'- cCCGGccGCCGUCGUCGACGgcucuuggccgcugCGcCCGUg -3'
miRNA:   3'- cGGCC--CGGCAGCAGCUGCa-------------GC-GGCAg -5'
26314 5' -61.3 NC_005345.2 + 10730 0.72 0.185936
Target:  5'- gGCCGGaugGCCG-CGcUCGAUGUCGUCGcCg -3'
miRNA:   3'- -CGGCC---CGGCaGC-AGCUGCAGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 37731 0.71 0.190757
Target:  5'- gGCgCGGcGCCGgcugGUCGGCGUCGUCGa- -3'
miRNA:   3'- -CG-GCC-CGGCag--CAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 7812 0.71 0.194197
Target:  5'- cGCCGGacGCCGUgaaCGUCGGCGUguagggcguccagcCGCCGg- -3'
miRNA:   3'- -CGGCC--CGGCA---GCAGCUGCA--------------GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18500 0.71 0.195687
Target:  5'- cCCGGGUCGagGUCGagcgaguacgcgGCGUCGgCGUCc -3'
miRNA:   3'- cGGCCCGGCagCAGC------------UGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 11206 0.71 0.195687
Target:  5'- cGCuCGGGCac-CGUCGGCGUCGaggCGUCc -3'
miRNA:   3'- -CG-GCCCGgcaGCAGCUGCAGCg--GCAG- -5'
26314 5' -61.3 NC_005345.2 + 18130 0.71 0.200729
Target:  5'- cGCCGGcGCCGUCGUCccGAUcccCGgCGUCg -3'
miRNA:   3'- -CGGCC-CGGCAGCAG--CUGca-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44751 0.71 0.200729
Target:  5'- uCCGGGCC-UUGUCGaucgcgcucauGCGgCGCCGUCc -3'
miRNA:   3'- cGGCCCGGcAGCAGC-----------UGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29510 0.71 0.202777
Target:  5'- cGUCGGcauucgucauGUCGUCGUCGGCGUcgagguacucgggggCGUCGUCg -3'
miRNA:   3'- -CGGCC----------CGGCAGCAGCUGCA---------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 42105 0.71 0.216535
Target:  5'- gGCCGGGCCGcC-UCGA--UCGCCGg- -3'
miRNA:   3'- -CGGCCCGGCaGcAGCUgcAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18594 0.71 0.216535
Target:  5'- cGCCGGGUCGaaagCGGuCGgCGCCGUCa -3'
miRNA:   3'- -CGGCCCGGCagcaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 24672 0.7 0.222036
Target:  5'- cCCGGGaCCGgcCGUCGAUGaUCGCCugauaGUCg -3'
miRNA:   3'- cGGCCC-GGCa-GCAGCUGC-AGCGG-----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.