Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26314 | 5' | -61.3 | NC_005345.2 | + | 28141 | 0.7 | 0.222036 |
Target: 5'- cCCGGGCCGgCGaacGCGUCGCCcgGUCg -3' miRNA: 3'- cGGCCCGGCaGCagcUGCAGCGG--CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 45104 | 0.7 | 0.222036 |
Target: 5'- uGUCGGcGC--UCGUCGGCGcCGUCGUCg -3' miRNA: 3'- -CGGCC-CGgcAGCAGCUGCaGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 14669 | 0.7 | 0.227655 |
Target: 5'- gGCCGGGCgG-CGUCGcCGaUGCCGg- -3' miRNA: 3'- -CGGCCCGgCaGCAGCuGCaGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 2102 | 0.7 | 0.233395 |
Target: 5'- gGCCGGGgucagCGUCGUCGAgaCGgCGCCG-Ca -3' miRNA: 3'- -CGGCCCg----GCAGCAGCU--GCaGCGGCaG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 12648 | 0.7 | 0.233395 |
Target: 5'- cGCCGgggcgcggucGGCCGcCGUUGGCGUaccCGCCGg- -3' miRNA: 3'- -CGGC----------CCGGCaGCAGCUGCA---GCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 26794 | 0.7 | 0.233395 |
Target: 5'- gGCCGGcGCCG-CGUCGcagGCGcugcUCGCCG-Ca -3' miRNA: 3'- -CGGCC-CGGCaGCAGC---UGC----AGCGGCaG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 46431 | 0.7 | 0.238664 |
Target: 5'- cGCCGGGCgGgCGggagacaUCGGCGcCGCCGa- -3' miRNA: 3'- -CGGCCCGgCaGC-------AGCUGCaGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 24103 | 0.7 | 0.245238 |
Target: 5'- cGCgGGGUCGgCGUacaugcccaCGACGUCGUaCGUCg -3' miRNA: 3'- -CGgCCCGGCaGCA---------GCUGCAGCG-GCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 8712 | 0.69 | 0.257576 |
Target: 5'- gGCUGuGGCCGacUCGUC--CGUCGCCGg- -3' miRNA: 3'- -CGGC-CCGGC--AGCAGcuGCAGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 7305 | 0.69 | 0.257576 |
Target: 5'- cGCCGaGGUCGUCcccgaugaGUCGGCGgaCGCCGa- -3' miRNA: 3'- -CGGC-CCGGCAG--------CAGCUGCa-GCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 1277 | 0.69 | 0.257576 |
Target: 5'- cGCC-GGCCGaCGUCacCGUCGCCGg- -3' miRNA: 3'- -CGGcCCGGCaGCAGcuGCAGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 8432 | 0.69 | 0.257576 |
Target: 5'- cCCGGGUCGcUGUCGACGacgagcacgggCGCgGUCg -3' miRNA: 3'- cGGCCCGGCaGCAGCUGCa----------GCGgCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 40458 | 0.69 | 0.257576 |
Target: 5'- aGCCGGGCCGcccaCGUC-ACGgccacCGCCG-Cg -3' miRNA: 3'- -CGGCCCGGCa---GCAGcUGCa----GCGGCaG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 5766 | 0.69 | 0.263934 |
Target: 5'- cGCCGaGGCgGUCcgcagGUCGGCGUaCG-CGUCg -3' miRNA: 3'- -CGGC-CCGgCAG-----CAGCUGCA-GCgGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 34635 | 0.69 | 0.263934 |
Target: 5'- -aCGGGgCGUgGcugcugccgcUCGGCGUCGCgGUCg -3' miRNA: 3'- cgGCCCgGCAgC----------AGCUGCAGCGgCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 34106 | 0.69 | 0.266512 |
Target: 5'- cGCCGGGCCGgauggcuggaagaGUCGGgGUgGCCa-- -3' miRNA: 3'- -CGGCCCGGCag-----------CAGCUgCAgCGGcag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 22297 | 0.69 | 0.269764 |
Target: 5'- uGUCGGGCaCGUUGcccgcgcUCGGCG-CGCCGg- -3' miRNA: 3'- -CGGCCCG-GCAGC-------AGCUGCaGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 13403 | 0.69 | 0.270418 |
Target: 5'- cGCCGGuucguccugcGCCGcacCGUCGACGUCuCCGg- -3' miRNA: 3'- -CGGCC----------CGGCa--GCAGCUGCAGcGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 6416 | 0.69 | 0.270418 |
Target: 5'- cGCgGGcccGCCGUCgGUCGGCGaguggUCGCCGa- -3' miRNA: 3'- -CGgCC---CGGCAG-CAGCUGC-----AGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 3715 | 0.69 | 0.277029 |
Target: 5'- uGCCGGGgggugccugCGaCGUCGACGaCGCgGUCg -3' miRNA: 3'- -CGGCCCg--------GCaGCAGCUGCaGCGgCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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