miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 3715 0.69 0.277029
Target:  5'- uGCCGGGgggugccugCGaCGUCGACGaCGCgGUCg -3'
miRNA:   3'- -CGGCCCg--------GCaGCAGCUGCaGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 35076 0.69 0.283769
Target:  5'- gGCCGcgaaGGUcuuguucgCGaUCGUCGugGUCGCgGUCg -3'
miRNA:   3'- -CGGC----CCG--------GC-AGCAGCugCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 46611 0.69 0.283769
Target:  5'- uCgGGGCCGgCGcCGGgugcccCGUCGCCGUUg -3'
miRNA:   3'- cGgCCCGGCaGCaGCU------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 31776 0.69 0.290638
Target:  5'- cUCGGGUgCGggGUCGACGcacucggguUCGCCGUCc -3'
miRNA:   3'- cGGCCCG-GCagCAGCUGC---------AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 40704 0.69 0.295524
Target:  5'- gGCCGGuGCCGUcCGuccacaccgaccgcUCGGCGUCcaGCCG-Cg -3'
miRNA:   3'- -CGGCC-CGGCA-GC--------------AGCUGCAG--CGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 15038 0.69 0.297637
Target:  5'- aUCGcGUCGgCGgCGAUGUCGCCGUCg -3'
miRNA:   3'- cGGCcCGGCaGCaGCUGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3146 0.68 0.304766
Target:  5'- aGCCGuGCCGacggCGUCGGCGa-GCuCGUCg -3'
miRNA:   3'- -CGGCcCGGCa---GCAGCUGCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 4884 0.68 0.304766
Target:  5'- aCCGGcGCCGcugcgaGUCGAUGcUCGCCGa- -3'
miRNA:   3'- cGGCC-CGGCag----CAGCUGC-AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 17188 0.68 0.307653
Target:  5'- aGUCGGcGCCuucccacagccucggGUUGUCGGUGUCGCCGg- -3'
miRNA:   3'- -CGGCC-CGG---------------CAGCAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 28841 0.68 0.311293
Target:  5'- cGCCGuggacgcGGCCGguaagacCGACGUCGCCGg- -3'
miRNA:   3'- -CGGC-------CCGGCagca---GCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 35871 0.68 0.312025
Target:  5'- gGUCGGGggcgUCGUCGcCGACGagcugcUCGCCGgUCg -3'
miRNA:   3'- -CGGCCC----GGCAGCaGCUGC------AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 18250 0.68 0.312025
Target:  5'- cCCGGuGCUGcUCGcCGGcCG-CGCCGUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 16700 0.68 0.312025
Target:  5'- -gCGGGUCGUCcgugauGUCGAgGUagagcgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCAG------CAGCUgCA------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 5189 0.68 0.317926
Target:  5'- cGCCGGGCUGcacgcaUCGgcacggccggccCGGCGcuacaCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGC------AGCa-----------GCUGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19337 0.68 0.319414
Target:  5'- uGCCGGGCUGcUCGcCGggggcgagcGCGUaGUCGUCu -3'
miRNA:   3'- -CGGCCCGGC-AGCaGC---------UGCAgCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 24972 0.68 0.326176
Target:  5'- gGCCGGucgaguggcaaguGcCCGUCGUCGAgGugcUCGCCG-Cg -3'
miRNA:   3'- -CGGCC-------------C-GGCAGCAGCUgC---AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 23988 0.68 0.326934
Target:  5'- gGCUGGggcaagucGCCGuUCGUCGGCGcgaucgcgcUCGCCGa- -3'
miRNA:   3'- -CGGCC--------CGGC-AGCAGCUGC---------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 8653 0.68 0.326934
Target:  5'- cUCGGcGCCGaUCGUCGcgGCGaucUCGCCGaUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCAGC--UGC---AGCGGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.