miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 750 0.67 0.382351
Target:  5'- uGgUGGG-CGUCcagGUCGACGUucucccagcgcagCGCCGUCg -3'
miRNA:   3'- -CgGCCCgGCAG---CAGCUGCA-------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 929 0.66 0.400414
Target:  5'- aCCGGcGUcaCGUCGUCGAgGUCGCg--- -3'
miRNA:   3'- cGGCC-CG--GCAGCAGCUgCAGCGgcag -5'
26314 5' -61.3 NC_005345.2 + 1277 0.69 0.257576
Target:  5'- cGCC-GGCCGaCGUCacCGUCGCCGg- -3'
miRNA:   3'- -CGGcCCGGCaGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 2102 0.7 0.233395
Target:  5'- gGCCGGGgucagCGUCGUCGAgaCGgCGCCG-Ca -3'
miRNA:   3'- -CGGCCCg----GCAGCAGCU--GCaGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 2684 0.73 0.151106
Target:  5'- gGCCGcGGgCGUUGUCGAUGUgGgUGUCg -3'
miRNA:   3'- -CGGC-CCgGCAGCAGCUGCAgCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3146 0.68 0.304766
Target:  5'- aGCCGuGCCGacggCGUCGGCGa-GCuCGUCg -3'
miRNA:   3'- -CGGCcCGGCa---GCAGCUGCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 3463 0.67 0.391744
Target:  5'- cGCgCGGGCUGUCGgacaugccUCGACGUuaccCGCgCGa- -3'
miRNA:   3'- -CG-GCCCGGCAGC--------AGCUGCA----GCG-GCag -5'
26314 5' -61.3 NC_005345.2 + 3666 0.66 0.436282
Target:  5'- gGCCGGGaucgUGUCGUUugccggGugGUCGCCc-- -3'
miRNA:   3'- -CGGCCCg---GCAGCAG------CugCAGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 3715 0.69 0.277029
Target:  5'- uGCCGGGgggugccugCGaCGUCGACGaCGCgGUCg -3'
miRNA:   3'- -CGGCCCg--------GCaGCAGCUGCaGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 4643 0.78 0.067367
Target:  5'- uCCGGGCCGUCGccugcugugccUCGGcCGUCGCCuUCg -3'
miRNA:   3'- cGGCCCGGCAGC-----------AGCU-GCAGCGGcAG- -5'
26314 5' -61.3 NC_005345.2 + 4884 0.68 0.304766
Target:  5'- aCCGGcGCCGcugcgaGUCGAUGcUCGCCGa- -3'
miRNA:   3'- cGGCC-CGGCag----CAGCUGC-AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 5189 0.68 0.317926
Target:  5'- cGCCGGGCUGcacgcaUCGgcacggccggccCGGCGcuacaCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGC------AGCa-----------GCUGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 5614 0.74 0.136007
Target:  5'- cGCCGGGCuCGUgGcCGACGcggugaUCGCCGa- -3'
miRNA:   3'- -CGGCCCG-GCAgCaGCUGC------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 5766 0.69 0.263934
Target:  5'- cGCCGaGGCgGUCcgcagGUCGGCGUaCG-CGUCg -3'
miRNA:   3'- -CGGC-CCGgCAG-----CAGCUGCA-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 6362 0.72 0.172112
Target:  5'- cGCCGGGuuGgccgCGgUGGCGUUGCgGUCc -3'
miRNA:   3'- -CGGCCCggCa---GCaGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 6416 0.69 0.270418
Target:  5'- cGCgGGcccGCCGUCgGUCGGCGaguggUCGCCGa- -3'
miRNA:   3'- -CGgCC---CGGCAG-CAGCUGC-----AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 7023 0.68 0.334584
Target:  5'- cGCCGGGUCGcCgGUCGACcg-GCCGg- -3'
miRNA:   3'- -CGGCCCGGCaG-CAGCUGcagCGGCag -5'
26314 5' -61.3 NC_005345.2 + 7305 0.69 0.257576
Target:  5'- cGCCGaGGUCGUCcccgaugaGUCGGCGgaCGCCGa- -3'
miRNA:   3'- -CGGC-CCGGCAG--------CAGCUGCa-GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 7812 0.71 0.194197
Target:  5'- cGCCGGacGCCGUgaaCGUCGGCGUguagggcguccagcCGCCGg- -3'
miRNA:   3'- -CGGCC--CGGCA---GCAGCUGCA--------------GCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.