miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 7960 0.67 0.350275
Target:  5'- gGCgGGGaucCCGUCgGUCGuCGUgucgUGCCGUCc -3'
miRNA:   3'- -CGgCCC---GGCAG-CAGCuGCA----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8122 0.72 0.183095
Target:  5'- cCCGGccGCCGUCGUCGACGgcucuuggccgcugCGcCCGUg -3'
miRNA:   3'- cGGCC--CGGCAGCAGCUGCa-------------GC-GGCAg -5'
26314 5' -61.3 NC_005345.2 + 8432 0.69 0.257576
Target:  5'- cCCGGGUCGcUGUCGACGacgagcacgggCGCgGUCg -3'
miRNA:   3'- cGGCCCGGCaGCAGCUGCa----------GCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 8653 0.68 0.326934
Target:  5'- cUCGGcGCCGaUCGUCGcgGCGaucUCGCCGaUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCAGC--UGC---AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 8694 0.67 0.366482
Target:  5'- -aCGGGuuGUCGcCGAUGUCgaacgugcgcggGCCGaUCg -3'
miRNA:   3'- cgGCCCggCAGCaGCUGCAG------------CGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 8712 0.69 0.257576
Target:  5'- gGCUGuGGCCGacUCGUC--CGUCGCCGg- -3'
miRNA:   3'- -CGGC-CCGGC--AGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 8884 1.11 0.000222
Target:  5'- gGCCGGGCCGUCGUCGACGUCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGCAGCAGCUGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 9079 0.75 0.105272
Target:  5'- uCCGGGCCGcCGUCGccggcgaccgcccgcACGUCGCgGUg -3'
miRNA:   3'- cGGCCCGGCaGCAGC---------------UGCAGCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 9169 0.67 0.366482
Target:  5'- uGCaCGGGCCgGUCGugugcgagcugaUCGACGccggggUGCCGUa -3'
miRNA:   3'- -CG-GCCCGG-CAGC------------AGCUGCa-----GCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 10529 0.78 0.069243
Target:  5'- cGCCGaGGCCGaCGUCGAgaUCGCCGUg -3'
miRNA:   3'- -CGGC-CCGGCaGCAGCUgcAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 10730 0.72 0.185936
Target:  5'- gGCCGGaugGCCG-CGcUCGAUGUCGUCGcCg -3'
miRNA:   3'- -CGGCC---CGGCaGC-AGCUGCAGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 10786 0.66 0.435363
Target:  5'- uGCCGcuugcucGGCCGUCcgcaCGgauGCGUUGCCGUUc -3'
miRNA:   3'- -CGGC-------CCGGCAGca--GC---UGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 11206 0.71 0.195687
Target:  5'- cGCuCGGGCac-CGUCGGCGUCGaggCGUCc -3'
miRNA:   3'- -CG-GCCCGgcaGCAGCUGCAGCg--GCAG- -5'
26314 5' -61.3 NC_005345.2 + 11332 0.67 0.390884
Target:  5'- cCCGGGCCGUuccggcCGUUGgugccgagcagcaGCGucgcauugaguuUCGCCGUCc -3'
miRNA:   3'- cGGCCCGGCA------GCAGC-------------UGC------------AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 12648 0.7 0.233395
Target:  5'- cGCCGgggcgcggucGGCCGcCGUUGGCGUaccCGCCGg- -3'
miRNA:   3'- -CGGC----------CCGGCaGCAGCUGCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 13403 0.69 0.270418
Target:  5'- cGCCGGuucguccugcGCCGcacCGUCGACGUCuCCGg- -3'
miRNA:   3'- -CGGCC----------CGGCa--GCAGCUGCAGcGGCag -5'
26314 5' -61.3 NC_005345.2 + 14391 0.67 0.383198
Target:  5'- gGCCGGuGCCGaucCGgcugC-ACGUCGCCGa- -3'
miRNA:   3'- -CGGCC-CGGCa--GCa---GcUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 14669 0.7 0.227655
Target:  5'- gGCCGGGCgG-CGUCGcCGaUGCCGg- -3'
miRNA:   3'- -CGGCCCGgCaGCAGCuGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 14851 0.67 0.391744
Target:  5'- uGCCGGGCUGcagcgggCGcUCGACG-CgGCCGa- -3'
miRNA:   3'- -CGGCCCGGCa------GC-AGCUGCaG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 15038 0.69 0.297637
Target:  5'- aUCGcGUCGgCGgCGAUGUCGCCGUCg -3'
miRNA:   3'- cGGCcCGGCaGCaGCUGCAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.