miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 15314 0.66 0.445535
Target:  5'- cGCCcGGCUGUagGUCGguGCGUCgGCCGg- -3'
miRNA:   3'- -CGGcCCGGCAg-CAGC--UGCAG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 16130 0.66 0.40832
Target:  5'- cCCGcGGCCGagcccgaUCGUCGACGccccCGCCa-- -3'
miRNA:   3'- cGGC-CCGGC-------AGCAGCUGCa---GCGGcag -5'
26314 5' -61.3 NC_005345.2 + 16360 0.67 0.358315
Target:  5'- cGCCGaGCa-UCGccgCGGCGUCGCCGcUCu -3'
miRNA:   3'- -CGGCcCGgcAGCa--GCUGCAGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 16363 0.66 0.427141
Target:  5'- gGCCGGcGCCG-CGgugaucgCGACGaUCGgguUCGUCg -3'
miRNA:   3'- -CGGCC-CGGCaGCa------GCUGC-AGC---GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 16700 0.68 0.312025
Target:  5'- -gCGGGUCGUCcgugauGUCGAgGUagagcgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCAG------CAGCUgCA------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 17188 0.68 0.307653
Target:  5'- aGUCGGcGCCuucccacagccucggGUUGUCGGUGUCGCCGg- -3'
miRNA:   3'- -CGGCC-CGG---------------CAGCAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 17975 0.67 0.366482
Target:  5'- uGCCGGGCCG-CGgccUCGAUcUC-CCGUg -3'
miRNA:   3'- -CGGCCCGGCaGC---AGCUGcAGcGGCAg -5'
26314 5' -61.3 NC_005345.2 + 18130 0.71 0.200729
Target:  5'- cGCCGGcGCCGUCGUCccGAUcccCGgCGUCg -3'
miRNA:   3'- -CGGCC-CGGCAGCAG--CUGca-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18250 0.68 0.312025
Target:  5'- cCCGGuGCUGcUCGcCGGcCG-CGCCGUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18349 0.72 0.179829
Target:  5'- cCCGGGUCGagGUCGACcagucggucacgguGUUGCCGUa -3'
miRNA:   3'- cGGCCCGGCagCAGCUG--------------CAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 18500 0.71 0.195687
Target:  5'- cCCGGGUCGagGUCGagcgaguacgcgGCGUCGgCGUCc -3'
miRNA:   3'- cGGCCCGGCagCAGC------------UGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18594 0.71 0.216535
Target:  5'- cGCCGGGUCGaaagCGGuCGgCGCCGUCa -3'
miRNA:   3'- -CGGCCCGGCagcaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18670 0.68 0.334584
Target:  5'- aGCCucaccgaagagGGuGCCGUCGUCGucuuccugaucGCGgucggCGUCGUCa -3'
miRNA:   3'- -CGG-----------CC-CGGCAGCAGC-----------UGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18903 0.68 0.326934
Target:  5'- gGCCGGacccgcaCCGUCGUCGAcCGgcucacCGCCGg- -3'
miRNA:   3'- -CGGCCc------GGCAGCAGCU-GCa-----GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18926 0.68 0.342365
Target:  5'- cUCGcGGCuCG-CGUCGGCGUCGaCGUUg -3'
miRNA:   3'- cGGC-CCG-GCaGCAGCUGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19008 0.73 0.139647
Target:  5'- aGCgGGGCgG-CGccUCGACGUCGCCGcCc -3'
miRNA:   3'- -CGgCCCGgCaGC--AGCUGCAGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 19066 0.72 0.167712
Target:  5'- gGCCgucucgGGGCCGugcUCGcCGAUGagcUCGCCGUCg -3'
miRNA:   3'- -CGG------CCCGGC---AGCaGCUGC---AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19164 0.72 0.177071
Target:  5'- cGCCGGGcCCGUacggcugccCGUCGACGUgcacguacgcgaucaGUCGUCg -3'
miRNA:   3'- -CGGCCC-GGCA---------GCAGCUGCAg--------------CGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19337 0.68 0.319414
Target:  5'- uGCCGGGCUGcUCGcCGggggcgagcGCGUaGUCGUCu -3'
miRNA:   3'- -CGGCCCGGC-AGCaGC---------UGCAgCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 20820 0.75 0.109898
Target:  5'- uGUCGcGCuCGUCGUCGuccuggucguCGUCGCCGUCg -3'
miRNA:   3'- -CGGCcCG-GCAGCAGCu---------GCAGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.