Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26314 | 5' | -61.3 | NC_005345.2 | + | 20894 | 0.78 | 0.060341 |
Target: 5'- aUCGcGUCGUCGUCGACcUCGCCGUCg -3' miRNA: 3'- cGGCcCGGCAGCAGCUGcAGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 21218 | 0.82 | 0.033654 |
Target: 5'- cGCCGGuGUCGuccgugucggagUCGUCGGCGUCGUCGUCc -3' miRNA: 3'- -CGGCC-CGGC------------AGCAGCUGCAGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 21256 | 0.77 | 0.077263 |
Target: 5'- nCCuGGUCGUCGUcCGuguCGUCGCCGUCg -3' miRNA: 3'- cGGcCCGGCAGCA-GCu--GCAGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 21451 | 0.67 | 0.350275 |
Target: 5'- uGCaGGGCUGccgUGUCGGCG-CGCCcgGUCa -3' miRNA: 3'- -CGgCCCGGCa--GCAGCUGCaGCGG--CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 22292 | 0.68 | 0.334584 |
Target: 5'- gGCCGGGgCGacguggGUCGAggUGUCGCgGUCc -3' miRNA: 3'- -CGGCCCgGCag----CAGCU--GCAGCGgCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 22297 | 0.69 | 0.269764 |
Target: 5'- uGUCGGGCaCGUUGcccgcgcUCGGCG-CGCCGg- -3' miRNA: 3'- -CGGCCCG-GCAGC-------AGCUGCaGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 22672 | 0.66 | 0.445535 |
Target: 5'- gGUCGGGCaGUCGcUCGuCGUgGCgGUg -3' miRNA: 3'- -CGGCCCGgCAGC-AGCuGCAgCGgCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 23178 | 0.68 | 0.334584 |
Target: 5'- cCCGGG-CGUacccgaaccCGUCGAUGUCGuuGUg -3' miRNA: 3'- cGGCCCgGCA---------GCAGCUGCAGCggCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 23988 | 0.68 | 0.326934 |
Target: 5'- gGCUGGggcaagucGCCGuUCGUCGGCGcgaucgcgcUCGCCGa- -3' miRNA: 3'- -CGGCC--------CGGC-AGCAGCUGC---------AGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 24103 | 0.7 | 0.245238 |
Target: 5'- cGCgGGGUCGgCGUacaugcccaCGACGUCGUaCGUCg -3' miRNA: 3'- -CGgCCCGGCaGCA---------GCUGCAGCG-GCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 24672 | 0.7 | 0.222036 |
Target: 5'- cCCGGGaCCGgcCGUCGAUGaUCGCCugauaGUCg -3' miRNA: 3'- cGGCCC-GGCa-GCAGCUGC-AGCGG-----CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 24972 | 0.68 | 0.326176 |
Target: 5'- gGCCGGucgaguggcaaguGcCCGUCGUCGAgGugcUCGCCG-Cg -3' miRNA: 3'- -CGGCC-------------C-GGCAGCAGCUgC---AGCGGCaG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 26312 | 0.82 | 0.035293 |
Target: 5'- aCCGGGaugaCCGUCGUCGAucagccguucgugcCGUCGCCGUCc -3' miRNA: 3'- cGGCCC----GGCAGCAGCU--------------GCAGCGGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 26794 | 0.7 | 0.233395 |
Target: 5'- gGCCGGcGCCG-CGUCGcagGCGcugcUCGCCG-Ca -3' miRNA: 3'- -CGGCC-CGGCaGCAGC---UGC----AGCGGCaG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 27126 | 0.68 | 0.340798 |
Target: 5'- gGCCGGGaCCGUC--CGGCGggcccggcaugcCGCCGUg -3' miRNA: 3'- -CGGCCC-GGCAGcaGCUGCa-----------GCGGCAg -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 27581 | 0.67 | 0.350275 |
Target: 5'- cGUCGGGCCGUC-UCGcgccaACGUgCGgCGUUc -3' miRNA: 3'- -CGGCCCGGCAGcAGC-----UGCA-GCgGCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 27851 | 0.66 | 0.436282 |
Target: 5'- -aCGGGCgG-CGUCGcuCGUCGUacuCGUCg -3' miRNA: 3'- cgGCCCGgCaGCAGCu-GCAGCG---GCAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 28141 | 0.7 | 0.222036 |
Target: 5'- cCCGGGCCGgCGaacGCGUCGCCcgGUCg -3' miRNA: 3'- cGGCCCGGCaGCagcUGCAGCGG--CAG- -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 28841 | 0.68 | 0.311293 |
Target: 5'- cGCCGuggacgcGGCCGguaagacCGACGUCGCCGg- -3' miRNA: 3'- -CGGC-------CCGGCagca---GCUGCAGCGGCag -5' |
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26314 | 5' | -61.3 | NC_005345.2 | + | 29309 | 0.68 | 0.319414 |
Target: 5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3' miRNA: 3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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