miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 48180 0.67 0.374777
Target:  5'- uCCGGGCCGcCGUCaagGACGgcCGgCGUa -3'
miRNA:   3'- cGGCCCGGCaGCAG---CUGCa-GCgGCAg -5'
26314 5' -61.3 NC_005345.2 + 47109 0.72 0.176615
Target:  5'- cGCCGGGCCG-CGccgggcccgcUCGACGaggaCGCCGa- -3'
miRNA:   3'- -CGGCCCGGCaGC----------AGCUGCa---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 47039 0.66 0.400414
Target:  5'- -gCGGcGCCGUC-UCGACGaCGCUGa- -3'
miRNA:   3'- cgGCC-CGGCAGcAGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 46819 0.66 0.400414
Target:  5'- cGCuCGGacGCCGagUCGUUGACGcacuUCGCCGa- -3'
miRNA:   3'- -CG-GCC--CGGC--AGCAGCUGC----AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 46611 0.69 0.283769
Target:  5'- uCgGGGCCGgCGcCGGgugcccCGUCGCCGUUg -3'
miRNA:   3'- cGgCCCGGCaGCaGCU------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 46431 0.7 0.238664
Target:  5'- cGCCGGGCgGgCGggagacaUCGGCGcCGCCGa- -3'
miRNA:   3'- -CGGCCCGgCaGC-------AGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 45104 0.7 0.222036
Target:  5'- uGUCGGcGC--UCGUCGGCGcCGUCGUCg -3'
miRNA:   3'- -CGGCC-CGgcAGCAGCUGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44751 0.71 0.200729
Target:  5'- uCCGGGCC-UUGUCGaucgcgcucauGCGgCGCCGUCc -3'
miRNA:   3'- cGGCCCGGcAGCAGC-----------UGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44588 0.67 0.358315
Target:  5'- cUCGGGCagcaGUCGUacACGcUGCCGUCg -3'
miRNA:   3'- cGGCCCGg---CAGCAgcUGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44380 0.67 0.391744
Target:  5'- -aCGGGUCGcCGgCGAgGgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCaGCaGCUgCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 43948 0.67 0.390025
Target:  5'- cGCCGGGCCGgccgugccgaugCGUgcagccCGGCGgcUCGCCcgacucGUCg -3'
miRNA:   3'- -CGGCCCGGCa-----------GCA------GCUGC--AGCGG------CAG- -5'
26314 5' -61.3 NC_005345.2 + 43760 0.72 0.181222
Target:  5'- cGCCGGGCCugaGUgGAC-UCGcCCGUCa -3'
miRNA:   3'- -CGGCCCGGcagCAgCUGcAGC-GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 43545 0.66 0.418114
Target:  5'- cGCCGaGCuCGUCGcCGACaagcUCGCCGa- -3'
miRNA:   3'- -CGGCcCG-GCAGCaGCUGc---AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 42474 0.79 0.051114
Target:  5'- cGCCGaGGCCGUCGUCGAgGagaUCGCCa-- -3'
miRNA:   3'- -CGGC-CCGGCAGCAGCUgC---AGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 42105 0.71 0.216535
Target:  5'- gGCCGGGCCGcC-UCGA--UCGCCGg- -3'
miRNA:   3'- -CGGCCCGGCaGcAGCUgcAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 41887 0.76 0.098676
Target:  5'- uCCGGGCUGUCGagcagcugcUCGuCGUCGCCugGUCg -3'
miRNA:   3'- cGGCCCGGCAGC---------AGCuGCAGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 40704 0.69 0.295524
Target:  5'- gGCCGGuGCCGUcCGuccacaccgaccgcUCGGCGUCcaGCCG-Cg -3'
miRNA:   3'- -CGGCC-CGGCA-GC--------------AGCUGCAG--CGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 40458 0.69 0.257576
Target:  5'- aGCCGGGCCGcccaCGUC-ACGgccacCGCCG-Cg -3'
miRNA:   3'- -CGGCCCGGCa---GCAGcUGCa----GCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 39904 0.67 0.361566
Target:  5'- gGCCGcaCCGUgGUCGcggcguacgacuugaGCGUCGCCGg- -3'
miRNA:   3'- -CGGCccGGCAgCAGC---------------UGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 39202 0.66 0.400414
Target:  5'- cCCGGGCCGcggGUUGGCGa--CCGUCg -3'
miRNA:   3'- cGGCCCGGCag-CAGCUGCagcGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.