miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 37731 0.71 0.190757
Target:  5'- gGCgCGGcGCCGgcugGUCGGCGUCGUCGa- -3'
miRNA:   3'- -CG-GCC-CGGCag--CAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 37268 0.66 0.436282
Target:  5'- gGUCGcGUCGUCGUCGAgGg-GCaCGUCg -3'
miRNA:   3'- -CGGCcCGGCAGCAGCUgCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 37138 0.67 0.366482
Target:  5'- aGCCGGGCagCGUCGUCccgaguCGUuccUGCCGg- -3'
miRNA:   3'- -CGGCCCG--GCAGCAGcu----GCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 37057 0.78 0.069243
Target:  5'- gGCCGGcGgcgaCGUCGUCGAucUGUCGCUGUCg -3'
miRNA:   3'- -CGGCC-Cg---GCAGCAGCU--GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 36904 0.76 0.096044
Target:  5'- aGCCGGGCCugcUCGcUCGAC-UCGCgGUCa -3'
miRNA:   3'- -CGGCCCGGc--AGC-AGCUGcAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 36774 0.68 0.326934
Target:  5'- aCCGGGUCGgCGUCGGCGaUCGgCa-- -3'
miRNA:   3'- cGGCCCGGCaGCAGCUGC-AGCgGcag -5'
26314 5' -61.3 NC_005345.2 + 35871 0.68 0.312025
Target:  5'- gGUCGGGggcgUCGUCGcCGACGagcugcUCGCCGgUCg -3'
miRNA:   3'- -CGGCCC----GGCAGCaGCUGC------AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 35688 0.66 0.415428
Target:  5'- cGCCGGGuUCGUCgGUCugggcaagcugccgGACG-CGCCGa- -3'
miRNA:   3'- -CGGCCC-GGCAG-CAG--------------CUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 35686 0.79 0.051114
Target:  5'- cGUCGGGCCacagcacgccGUCGgCGACGUCGCCGg- -3'
miRNA:   3'- -CGGCCCGG----------CAGCaGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 35561 0.67 0.382351
Target:  5'- cGgCGGGUCGagccacacgaucuUCGUCG-CGcCGCCGUg -3'
miRNA:   3'- -CgGCCCGGC-------------AGCAGCuGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 35495 0.66 0.418114
Target:  5'- gGgCGGcgcGCUGcUCGUCGGCGcucacgccgCGCCGUCc -3'
miRNA:   3'- -CgGCC---CGGC-AGCAGCUGCa--------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35356 0.66 0.418114
Target:  5'- --aGGGgCGU-GUCGGgGcCGCCGUCg -3'
miRNA:   3'- cggCCCgGCAgCAGCUgCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35076 0.69 0.283769
Target:  5'- gGCCGcgaaGGUcuuguucgCGaUCGUCGugGUCGCgGUCg -3'
miRNA:   3'- -CGGC----CCG--------GC-AGCAGCugCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 35004 0.72 0.181222
Target:  5'- -gCGGGCgGUCGgCGACGcUGCCGUg -3'
miRNA:   3'- cgGCCCGgCAGCaGCUGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 34635 0.69 0.263934
Target:  5'- -aCGGGgCGUgGcugcugccgcUCGGCGUCGCgGUCg -3'
miRNA:   3'- cgGCCCgGCAgC----------AGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 34106 0.69 0.266512
Target:  5'- cGCCGGGCCGgauggcuggaagaGUCGGgGUgGCCa-- -3'
miRNA:   3'- -CGGCCCGGCag-----------CAGCUgCAgCGGcag -5'
26314 5' -61.3 NC_005345.2 + 33863 0.69 0.277029
Target:  5'- cGCCGaGGCguuCGgCGUCGACGUgggggaCGCCGcUCg -3'
miRNA:   3'- -CGGC-CCG---GCaGCAGCUGCA------GCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 33398 0.72 0.172112
Target:  5'- aGCCGcGGUCGagGUCGGCGUCggguacguaucgGUCGUCc -3'
miRNA:   3'- -CGGC-CCGGCagCAGCUGCAG------------CGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 33328 0.76 0.086168
Target:  5'- aGCuCGGGCCGUCGgcCGGaGUCGCCGa- -3'
miRNA:   3'- -CG-GCCCGGCAGCa-GCUgCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 31776 0.69 0.290638
Target:  5'- cUCGGGUgCGggGUCGACGcacucggguUCGCCGUCc -3'
miRNA:   3'- cGGCCCG-GCagCAGCUGC---------AGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.