miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 30819 0.72 0.167712
Target:  5'- cCCGGGCCGaCGUCGcgGCGUgGCUG-Ca -3'
miRNA:   3'- cGGCCCGGCaGCAGC--UGCAgCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 30161 0.66 0.412754
Target:  5'- cGCuCGGGCCGaggcUCGggcaUCGACGcguggcgcucguuccUCGCCGa- -3'
miRNA:   3'- -CG-GCCCGGC----AGC----AGCUGC---------------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 29964 0.8 0.044486
Target:  5'- cGUCGGGCuCGUCGUCGAggggcuCGUCGgCGUCc -3'
miRNA:   3'- -CGGCCCG-GCAGCAGCU------GCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29510 0.71 0.202777
Target:  5'- cGUCGGcauucgucauGUCGUCGUCGGCGUcgagguacucgggggCGUCGUCg -3'
miRNA:   3'- -CGGCC----------CGGCAGCAGCUGCA---------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29435 0.67 0.366482
Target:  5'- uGCgGGcGUCGUCcUCGGCGUCGaggcgguacUCGUCg -3'
miRNA:   3'- -CGgCC-CGGCAGcAGCUGCAGC---------GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 28841 0.68 0.311293
Target:  5'- cGCCGuggacgcGGCCGguaagacCGACGUCGCCGg- -3'
miRNA:   3'- -CGGC-------CCGGCagca---GCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 28141 0.7 0.222036
Target:  5'- cCCGGGCCGgCGaacGCGUCGCCcgGUCg -3'
miRNA:   3'- cGGCCCGGCaGCagcUGCAGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 27851 0.66 0.436282
Target:  5'- -aCGGGCgG-CGUCGcuCGUCGUacuCGUCg -3'
miRNA:   3'- cgGCCCGgCaGCAGCu-GCAGCG---GCAG- -5'
26314 5' -61.3 NC_005345.2 + 27581 0.67 0.350275
Target:  5'- cGUCGGGCCGUC-UCGcgccaACGUgCGgCGUUc -3'
miRNA:   3'- -CGGCCCGGCAGcAGC-----UGCA-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 27126 0.68 0.340798
Target:  5'- gGCCGGGaCCGUC--CGGCGggcccggcaugcCGCCGUg -3'
miRNA:   3'- -CGGCCC-GGCAGcaGCUGCa-----------GCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 26794 0.7 0.233395
Target:  5'- gGCCGGcGCCG-CGUCGcagGCGcugcUCGCCG-Ca -3'
miRNA:   3'- -CGGCC-CGGCaGCAGC---UGC----AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 26312 0.82 0.035293
Target:  5'- aCCGGGaugaCCGUCGUCGAucagccguucgugcCGUCGCCGUCc -3'
miRNA:   3'- cGGCCC----GGCAGCAGCU--------------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 24972 0.68 0.326176
Target:  5'- gGCCGGucgaguggcaaguGcCCGUCGUCGAgGugcUCGCCG-Cg -3'
miRNA:   3'- -CGGCC-------------C-GGCAGCAGCUgC---AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 24672 0.7 0.222036
Target:  5'- cCCGGGaCCGgcCGUCGAUGaUCGCCugauaGUCg -3'
miRNA:   3'- cGGCCC-GGCa-GCAGCUGC-AGCGG-----CAG- -5'
26314 5' -61.3 NC_005345.2 + 24103 0.7 0.245238
Target:  5'- cGCgGGGUCGgCGUacaugcccaCGACGUCGUaCGUCg -3'
miRNA:   3'- -CGgCCCGGCaGCA---------GCUGCAGCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 23988 0.68 0.326934
Target:  5'- gGCUGGggcaagucGCCGuUCGUCGGCGcgaucgcgcUCGCCGa- -3'
miRNA:   3'- -CGGCC--------CGGC-AGCAGCUGC---------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 23178 0.68 0.334584
Target:  5'- cCCGGG-CGUacccgaaccCGUCGAUGUCGuuGUg -3'
miRNA:   3'- cGGCCCgGCA---------GCAGCUGCAGCggCAg -5'
26314 5' -61.3 NC_005345.2 + 22672 0.66 0.445535
Target:  5'- gGUCGGGCaGUCGcUCGuCGUgGCgGUg -3'
miRNA:   3'- -CGGCCCGgCAGC-AGCuGCAgCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 22297 0.69 0.269764
Target:  5'- uGUCGGGCaCGUUGcccgcgcUCGGCG-CGCCGg- -3'
miRNA:   3'- -CGGCCCG-GCAGC-------AGCUGCaGCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.