miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 26312 0.82 0.035293
Target:  5'- aCCGGGaugaCCGUCGUCGAucagccguucgugcCGUCGCCGUCc -3'
miRNA:   3'- cGGCCC----GGCAGCAGCU--------------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8712 0.69 0.257576
Target:  5'- gGCUGuGGCCGacUCGUC--CGUCGCCGg- -3'
miRNA:   3'- -CGGC-CCGGC--AGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 34635 0.69 0.263934
Target:  5'- -aCGGGgCGUgGcugcugccgcUCGGCGUCGCgGUCg -3'
miRNA:   3'- cgGCCCgGCAgC----------AGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 15314 0.66 0.445535
Target:  5'- cGCCcGGCUGUagGUCGguGCGUCgGCCGg- -3'
miRNA:   3'- -CGGcCCGGCAg-CAGC--UGCAG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 5614 0.74 0.136007
Target:  5'- cGCCGGGCuCGUgGcCGACGcggugaUCGCCGa- -3'
miRNA:   3'- -CGGCCCG-GCAgCaGCUGC------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 30819 0.72 0.167712
Target:  5'- cCCGGGCCGaCGUCGcgGCGUgGCUG-Ca -3'
miRNA:   3'- cGGCCCGGCaGCAGC--UGCAgCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 35004 0.72 0.181222
Target:  5'- -gCGGGCgGUCGgCGACGcUGCCGUg -3'
miRNA:   3'- cgGCCCGgCAGCaGCUGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 8122 0.72 0.183095
Target:  5'- cCCGGccGCCGUCGUCGACGgcucuuggccgcugCGcCCGUg -3'
miRNA:   3'- cGGCC--CGGCAGCAGCUGCa-------------GC-GGCAg -5'
26314 5' -61.3 NC_005345.2 + 18594 0.71 0.216535
Target:  5'- cGCCGGGUCGaaagCGGuCGgCGCCGUCa -3'
miRNA:   3'- -CGGCCCGGCagcaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 46431 0.7 0.238664
Target:  5'- cGCCGGGCgGgCGggagacaUCGGCGcCGCCGa- -3'
miRNA:   3'- -CGGCCCGgCaGC-------AGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 28141 0.7 0.222036
Target:  5'- cCCGGGCCGgCGaacGCGUCGCCcgGUCg -3'
miRNA:   3'- cGGCCCGGCaGCagcUGCAGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 18130 0.71 0.200729
Target:  5'- cGCCGGcGCCGUCGUCccGAUcccCGgCGUCg -3'
miRNA:   3'- -CGGCC-CGGCAGCAG--CUGca-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 42474 0.79 0.051114
Target:  5'- cGCCGaGGCCGUCGUCGAgGagaUCGCCa-- -3'
miRNA:   3'- -CGGC-CCGGCAGCAGCUgC---AGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 14669 0.7 0.227655
Target:  5'- gGCCGGGCgG-CGUCGcCGaUGCCGg- -3'
miRNA:   3'- -CGGCCCGgCaGCAGCuGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 10529 0.78 0.069243
Target:  5'- cGCCGaGGCCGaCGUCGAgaUCGCCGUg -3'
miRNA:   3'- -CGGC-CCGGCaGCAGCUgcAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 10730 0.72 0.185936
Target:  5'- gGCCGGaugGCCG-CGcUCGAUGUCGUCGcCg -3'
miRNA:   3'- -CGGCC---CGGCaGC-AGCUGCAGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 26794 0.7 0.233395
Target:  5'- gGCCGGcGCCG-CGUCGcagGCGcugcUCGCCG-Ca -3'
miRNA:   3'- -CGGCC-CGGCaGCAGC---UGC----AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 7305 0.69 0.257576
Target:  5'- cGCCGaGGUCGUCcccgaugaGUCGGCGgaCGCCGa- -3'
miRNA:   3'- -CGGC-CCGGCAG--------CAGCUGCa-GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 9079 0.75 0.105272
Target:  5'- uCCGGGCCGcCGUCGccggcgaccgcccgcACGUCGCgGUg -3'
miRNA:   3'- cGGCCCGGCaGCAGC---------------UGCAGCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 33398 0.72 0.172112
Target:  5'- aGCCGcGGUCGagGUCGGCGUCggguacguaucgGUCGUCc -3'
miRNA:   3'- -CGGC-CCGGCagCAGCUGCAG------------CGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.