miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 35076 0.69 0.283769
Target:  5'- gGCCGcgaaGGUcuuguucgCGaUCGUCGugGUCGCgGUCg -3'
miRNA:   3'- -CGGC----CCG--------GC-AGCAGCugCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 34635 0.69 0.263934
Target:  5'- -aCGGGgCGUgGcugcugccgcUCGGCGUCGCgGUCg -3'
miRNA:   3'- cgGCCCgGCAgC----------AGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 18130 0.71 0.200729
Target:  5'- cGCCGGcGCCGUCGUCccGAUcccCGgCGUCg -3'
miRNA:   3'- -CGGCC-CGGCAGCAG--CUGca-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 9079 0.75 0.105272
Target:  5'- uCCGGGCCGcCGUCGccggcgaccgcccgcACGUCGCgGUg -3'
miRNA:   3'- cGGCCCGGCaGCAGC---------------UGCAGCGgCAg -5'
26314 5' -61.3 NC_005345.2 + 750 0.67 0.382351
Target:  5'- uGgUGGG-CGUCcagGUCGACGUucucccagcgcagCGCCGUCg -3'
miRNA:   3'- -CgGCCCgGCAG---CAGCUGCA-------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 23988 0.68 0.326934
Target:  5'- gGCUGGggcaagucGCCGuUCGUCGGCGcgaucgcgcUCGCCGa- -3'
miRNA:   3'- -CGGCC--------CGGC-AGCAGCUGC---------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 8712 0.69 0.257576
Target:  5'- gGCUGuGGCCGacUCGUC--CGUCGCCGg- -3'
miRNA:   3'- -CGGC-CCGGC--AGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 10529 0.78 0.069243
Target:  5'- cGCCGaGGCCGaCGUCGAgaUCGCCGUg -3'
miRNA:   3'- -CGGC-CCGGCaGCAGCUgcAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 24972 0.68 0.326176
Target:  5'- gGCCGGucgaguggcaaguGcCCGUCGUCGAgGugcUCGCCG-Cg -3'
miRNA:   3'- -CGGCC-------------C-GGCAGCAGCUgC---AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 42474 0.79 0.051114
Target:  5'- cGCCGaGGCCGUCGUCGAgGagaUCGCCa-- -3'
miRNA:   3'- -CGGC-CCGGCAGCAGCUgC---AGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 7305 0.69 0.257576
Target:  5'- cGCCGaGGUCGUCcccgaugaGUCGGCGgaCGCCGa- -3'
miRNA:   3'- -CGGC-CCGGCAG--------CAGCUGCa-GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 4884 0.68 0.304766
Target:  5'- aCCGGcGCCGcugcgaGUCGAUGcUCGCCGa- -3'
miRNA:   3'- cGGCC-CGGCag----CAGCUGC-AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 14669 0.7 0.227655
Target:  5'- gGCCGGGCgG-CGUCGcCGaUGCCGg- -3'
miRNA:   3'- -CGGCCCGgCaGCAGCuGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18594 0.71 0.216535
Target:  5'- cGCCGGGUCGaaagCGGuCGgCGCCGUCa -3'
miRNA:   3'- -CGGCCCGGCagcaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35004 0.72 0.181222
Target:  5'- -gCGGGCgGUCGgCGACGcUGCCGUg -3'
miRNA:   3'- cgGCCCGgCAGCaGCUGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 5614 0.74 0.136007
Target:  5'- cGCCGGGCuCGUgGcCGACGcggugaUCGCCGa- -3'
miRNA:   3'- -CGGCCCG-GCAgCaGCUGC------AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 47039 0.66 0.400414
Target:  5'- -gCGGcGCCGUC-UCGACGaCGCUGa- -3'
miRNA:   3'- cgGCC-CGGCAGcAGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 14391 0.67 0.383198
Target:  5'- gGCCGGuGCCGaucCGgcugC-ACGUCGCCGa- -3'
miRNA:   3'- -CGGCC-CGGCa--GCa---GcUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18670 0.68 0.334584
Target:  5'- aGCCucaccgaagagGGuGCCGUCGUCGucuuccugaucGCGgucggCGUCGUCa -3'
miRNA:   3'- -CGG-----------CC-CGGCAGCAGC-----------UGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 36774 0.68 0.326934
Target:  5'- aCCGGGUCGgCGUCGGCGaUCGgCa-- -3'
miRNA:   3'- cGGCCCGGCaGCAGCUGC-AGCgGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.