miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 18903 0.68 0.326934
Target:  5'- gGCCGGacccgcaCCGUCGUCGAcCGgcucacCGCCGg- -3'
miRNA:   3'- -CGGCCc------GGCAGCAGCU-GCa-----GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 24972 0.68 0.326176
Target:  5'- gGCCGGucgaguggcaaguGcCCGUCGUCGAgGugcUCGCCG-Cg -3'
miRNA:   3'- -CGGCC-------------C-GGCAGCAGCUgC---AGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 35076 0.69 0.283769
Target:  5'- gGCCGcgaaGGUcuuguucgCGaUCGUCGugGUCGCgGUCg -3'
miRNA:   3'- -CGGC----CCG--------GC-AGCAGCugCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 34635 0.69 0.263934
Target:  5'- -aCGGGgCGUgGcugcugccgcUCGGCGUCGCgGUCg -3'
miRNA:   3'- cgGCCCgGCAgC----------AGCUGCAGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 14669 0.7 0.227655
Target:  5'- gGCCGGGCgG-CGUCGcCGaUGCCGg- -3'
miRNA:   3'- -CGGCCCGgCaGCAGCuGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 18594 0.71 0.216535
Target:  5'- cGCCGGGUCGaaagCGGuCGgCGCCGUCa -3'
miRNA:   3'- -CGGCCCGGCagcaGCU-GCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35004 0.72 0.181222
Target:  5'- -gCGGGCgGUCGgCGACGcUGCCGUg -3'
miRNA:   3'- cgGCCCGgCAGCaGCUGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 37731 0.71 0.190757
Target:  5'- gGCgCGGcGCCGgcugGUCGGCGUCGUCGa- -3'
miRNA:   3'- -CG-GCC-CGGCag--CAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 43760 0.72 0.181222
Target:  5'- cGCCGGGCCugaGUgGAC-UCGcCCGUCa -3'
miRNA:   3'- -CGGCCCGGcagCAgCUGcAGC-GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18349 0.72 0.179829
Target:  5'- cCCGGGUCGagGUCGACcagucggucacgguGUUGCCGUa -3'
miRNA:   3'- cGGCCCGGCagCAGCUG--------------CAGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 7812 0.71 0.194197
Target:  5'- cGCCGGacGCCGUgaaCGUCGGCGUguagggcguccagcCGCCGg- -3'
miRNA:   3'- -CGGCC--CGGCA---GCAGCUGCA--------------GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 11206 0.71 0.195687
Target:  5'- cGCuCGGGCac-CGUCGGCGUCGaggCGUCc -3'
miRNA:   3'- -CG-GCCCGgcaGCAGCUGCAGCg--GCAG- -5'
26314 5' -61.3 NC_005345.2 + 18500 0.71 0.195687
Target:  5'- cCCGGGUCGagGUCGagcgaguacgcgGCGUCGgCGUCc -3'
miRNA:   3'- cGGCCCGGCagCAGC------------UGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8694 0.67 0.366482
Target:  5'- -aCGGGuuGUCGcCGAUGUCgaacgugcgcggGCCGaUCg -3'
miRNA:   3'- cgGCCCggCAGCaGCUGCAG------------CGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19337 0.68 0.319414
Target:  5'- uGCCGGGCUGcUCGcCGggggcgagcGCGUaGUCGUCu -3'
miRNA:   3'- -CGGCCCGGC-AGCaGC---------UGCAgCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 39202 0.66 0.400414
Target:  5'- cCCGGGCCGcggGUUGGCGa--CCGUCg -3'
miRNA:   3'- cGGCCCGGCag-CAGCUGCagcGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 5189 0.68 0.317926
Target:  5'- cGCCGGGCUGcacgcaUCGgcacggccggccCGGCGcuacaCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGC------AGCa-----------GCUGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29435 0.67 0.366482
Target:  5'- uGCgGGcGUCGUCcUCGGCGUCGaggcgguacUCGUCg -3'
miRNA:   3'- -CGgCC-CGGCAGcAGCUGCAGC---------GGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.