miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 1277 0.69 0.257576
Target:  5'- cGCC-GGCCGaCGUCacCGUCGCCGg- -3'
miRNA:   3'- -CGGcCCGGCaGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 40458 0.69 0.257576
Target:  5'- aGCCGGGCCGcccaCGUC-ACGgccacCGCCG-Cg -3'
miRNA:   3'- -CGGCCCGGCa---GCAGcUGCa----GCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 27126 0.68 0.340798
Target:  5'- gGCCGGGaCCGUC--CGGCGggcccggcaugcCGCCGUg -3'
miRNA:   3'- -CGGCCC-GGCAGcaGCUGCa-----------GCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 7960 0.67 0.350275
Target:  5'- gGCgGGGaucCCGUCgGUCGuCGUgucgUGCCGUCc -3'
miRNA:   3'- -CGgCCC---GGCAG-CAGCuGCA----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18926 0.68 0.342365
Target:  5'- cUCGcGGCuCG-CGUCGGCGUCGaCGUUg -3'
miRNA:   3'- cGGC-CCG-GCaGCAGCUGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 23178 0.68 0.334584
Target:  5'- cCCGGG-CGUacccgaaccCGUCGAUGUCGuuGUg -3'
miRNA:   3'- cGGCCCgGCA---------GCAGCUGCAGCggCAg -5'
26314 5' -61.3 NC_005345.2 + 8653 0.68 0.326934
Target:  5'- cUCGGcGCCGaUCGUCGcgGCGaucUCGCCGaUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCAGC--UGC---AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 24103 0.7 0.245238
Target:  5'- cGCgGGGUCGgCGUacaugcccaCGACGUCGUaCGUCg -3'
miRNA:   3'- -CGgCCCGGCaGCA---------GCUGCAGCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 12648 0.7 0.233395
Target:  5'- cGCCGgggcgcggucGGCCGcCGUUGGCGUaccCGCCGg- -3'
miRNA:   3'- -CGGC----------CCGGCaGCAGCUGCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 37731 0.71 0.190757
Target:  5'- gGCgCGGcGCCGgcugGUCGGCGUCGUCGa- -3'
miRNA:   3'- -CG-GCC-CGGCag--CAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 7812 0.71 0.194197
Target:  5'- cGCCGGacGCCGUgaaCGUCGGCGUguagggcguccagcCGCCGg- -3'
miRNA:   3'- -CGGCC--CGGCA---GCAGCUGCA--------------GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 11206 0.71 0.195687
Target:  5'- cGCuCGGGCac-CGUCGGCGUCGaggCGUCc -3'
miRNA:   3'- -CG-GCCCGgcaGCAGCUGCAGCg--GCAG- -5'
26314 5' -61.3 NC_005345.2 + 18500 0.71 0.195687
Target:  5'- cCCGGGUCGagGUCGagcgaguacgcgGCGUCGgCGUCc -3'
miRNA:   3'- cGGCCCGGCagCAGC------------UGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44751 0.71 0.200729
Target:  5'- uCCGGGCC-UUGUCGaucgcgcucauGCGgCGCCGUCc -3'
miRNA:   3'- cGGCCCGGcAGCAGC-----------UGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29510 0.71 0.202777
Target:  5'- cGUCGGcauucgucauGUCGUCGUCGGCGUcgagguacucgggggCGUCGUCg -3'
miRNA:   3'- -CGGCC----------CGGCAGCAGCUGCA---------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 42105 0.71 0.216535
Target:  5'- gGCCGGGCCGcC-UCGA--UCGCCGg- -3'
miRNA:   3'- -CGGCCCGGCaGcAGCUgcAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 24672 0.7 0.222036
Target:  5'- cCCGGGaCCGgcCGUCGAUGaUCGCCugauaGUCg -3'
miRNA:   3'- cGGCCC-GGCa-GCAGCUGC-AGCGG-----CAG- -5'
26314 5' -61.3 NC_005345.2 + 2102 0.7 0.233395
Target:  5'- gGCCGGGgucagCGUCGUCGAgaCGgCGCCG-Ca -3'
miRNA:   3'- -CGGCCCg----GCAGCAGCU--GCaGCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.