miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 31776 0.69 0.290638
Target:  5'- cUCGGGUgCGggGUCGACGcacucggguUCGCCGUCc -3'
miRNA:   3'- cGGCCCG-GCagCAGCUGC---------AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 2102 0.7 0.233395
Target:  5'- gGCCGGGgucagCGUCGUCGAgaCGgCGCCG-Ca -3'
miRNA:   3'- -CGGCCCg----GCAGCAGCU--GCaGCGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 24672 0.7 0.222036
Target:  5'- cCCGGGaCCGgcCGUCGAUGaUCGCCugauaGUCg -3'
miRNA:   3'- cGGCCC-GGCa-GCAGCUGC-AGCGG-----CAG- -5'
26314 5' -61.3 NC_005345.2 + 42105 0.71 0.216535
Target:  5'- gGCCGGGCCGcC-UCGA--UCGCCGg- -3'
miRNA:   3'- -CGGCCCGGCaGcAGCUgcAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 29510 0.71 0.202777
Target:  5'- cGUCGGcauucgucauGUCGUCGUCGGCGUcgagguacucgggggCGUCGUCg -3'
miRNA:   3'- -CGGCC----------CGGCAGCAGCUGCA---------------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 44751 0.71 0.200729
Target:  5'- uCCGGGCC-UUGUCGaucgcgcucauGCGgCGCCGUCc -3'
miRNA:   3'- cGGCCCGGcAGCAGC-----------UGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18500 0.71 0.195687
Target:  5'- cCCGGGUCGagGUCGagcgaguacgcgGCGUCGgCGUCc -3'
miRNA:   3'- cGGCCCGGCagCAGC------------UGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 11206 0.71 0.195687
Target:  5'- cGCuCGGGCac-CGUCGGCGUCGaggCGUCc -3'
miRNA:   3'- -CG-GCCCGgcaGCAGCUGCAGCg--GCAG- -5'
26314 5' -61.3 NC_005345.2 + 7812 0.71 0.194197
Target:  5'- cGCCGGacGCCGUgaaCGUCGGCGUguagggcguccagcCGCCGg- -3'
miRNA:   3'- -CGGCC--CGGCA---GCAGCUGCA--------------GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 12648 0.7 0.233395
Target:  5'- cGCCGgggcgcggucGGCCGcCGUUGGCGUaccCGCCGg- -3'
miRNA:   3'- -CGGC----------CCGGCaGCAGCUGCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 24103 0.7 0.245238
Target:  5'- cGCgGGGUCGgCGUacaugcccaCGACGUCGUaCGUCg -3'
miRNA:   3'- -CGgCCCGGCaGCA---------GCUGCAGCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 1277 0.69 0.257576
Target:  5'- cGCC-GGCCGaCGUCacCGUCGCCGg- -3'
miRNA:   3'- -CGGcCCGGCaGCAGcuGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 46611 0.69 0.283769
Target:  5'- uCgGGGCCGgCGcCGGgugcccCGUCGCCGUUg -3'
miRNA:   3'- cGgCCCGGCaGCaGCU------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3715 0.69 0.277029
Target:  5'- uGCCGGGgggugccugCGaCGUCGACGaCGCgGUCg -3'
miRNA:   3'- -CGGCCCg--------GCaGCAGCUGCaGCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 6416 0.69 0.270418
Target:  5'- cGCgGGcccGCCGUCgGUCGGCGaguggUCGCCGa- -3'
miRNA:   3'- -CGgCC---CGGCAG-CAGCUGC-----AGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 22297 0.69 0.269764
Target:  5'- uGUCGGGCaCGUUGcccgcgcUCGGCG-CGCCGg- -3'
miRNA:   3'- -CGGCCCG-GCAGC-------AGCUGCaGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 34106 0.69 0.266512
Target:  5'- cGCCGGGCCGgauggcuggaagaGUCGGgGUgGCCa-- -3'
miRNA:   3'- -CGGCCCGGCag-----------CAGCUgCAgCGGcag -5'
26314 5' -61.3 NC_005345.2 + 5766 0.69 0.263934
Target:  5'- cGCCGaGGCgGUCcgcagGUCGGCGUaCG-CGUCg -3'
miRNA:   3'- -CGGC-CCGgCAG-----CAGCUGCA-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8432 0.69 0.257576
Target:  5'- cCCGGGUCGcUGUCGACGacgagcacgggCGCgGUCg -3'
miRNA:   3'- cGGCCCGGCaGCAGCUGCa----------GCGgCAG- -5'
26314 5' -61.3 NC_005345.2 + 40458 0.69 0.257576
Target:  5'- aGCCGGGCCGcccaCGUC-ACGgccacCGCCG-Cg -3'
miRNA:   3'- -CGGCCCGGCa---GCAGcUGCa----GCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.