miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 21451 0.67 0.350275
Target:  5'- uGCaGGGCUGccgUGUCGGCG-CGCCcgGUCa -3'
miRNA:   3'- -CGgCCCGGCa--GCAGCUGCaGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 48180 0.67 0.374777
Target:  5'- uCCGGGCCGcCGUCaagGACGgcCGgCGUa -3'
miRNA:   3'- cGGCCCGGCaGCAG---CUGCa-GCgGCAg -5'
26314 5' -61.3 NC_005345.2 + 29435 0.67 0.366482
Target:  5'- uGCgGGcGUCGUCcUCGGCGUCGaggcgguacUCGUCg -3'
miRNA:   3'- -CGgCC-CGGCAGcAGCUGCAGC---------GGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8694 0.67 0.366482
Target:  5'- -aCGGGuuGUCGcCGAUGUCgaacgugcgcggGCCGaUCg -3'
miRNA:   3'- cgGCCCggCAGCaGCUGCAG------------CGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 37138 0.67 0.366482
Target:  5'- aGCCGGGCagCGUCGUCccgaguCGUuccUGCCGg- -3'
miRNA:   3'- -CGGCCCG--GCAGCAGcu----GCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 17975 0.67 0.366482
Target:  5'- uGCCGGGCCG-CGgccUCGAUcUC-CCGUg -3'
miRNA:   3'- -CGGCCCGGCaGC---AGCUGcAGcGGCAg -5'
26314 5' -61.3 NC_005345.2 + 39904 0.67 0.361566
Target:  5'- gGCCGcaCCGUgGUCGcggcguacgacuugaGCGUCGCCGg- -3'
miRNA:   3'- -CGGCccGGCAgCAGC---------------UGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 44588 0.67 0.358315
Target:  5'- cUCGGGCagcaGUCGUacACGcUGCCGUCg -3'
miRNA:   3'- cGGCCCGg---CAGCAgcUGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 16360 0.67 0.358315
Target:  5'- cGCCGaGCa-UCGccgCGGCGUCGCCGcUCu -3'
miRNA:   3'- -CGGCcCGgcAGCa--GCUGCAGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 35561 0.67 0.382351
Target:  5'- cGgCGGGUCGagccacacgaucuUCGUCG-CGcCGCCGUg -3'
miRNA:   3'- -CgGCCCGGC-------------AGCAGCuGCaGCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 11332 0.67 0.390884
Target:  5'- cCCGGGCCGUuccggcCGUUGgugccgagcagcaGCGucgcauugaguuUCGCCGUCc -3'
miRNA:   3'- cGGCCCGGCA------GCAGC-------------UGC------------AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3463 0.67 0.391744
Target:  5'- cGCgCGGGCUGUCGgacaugccUCGACGUuaccCGCgCGa- -3'
miRNA:   3'- -CG-GCCCGGCAGC--------AGCUGCA----GCG-GCag -5'
26314 5' -61.3 NC_005345.2 + 37268 0.66 0.436282
Target:  5'- gGUCGcGUCGUCGUCGAgGg-GCaCGUCg -3'
miRNA:   3'- -CGGCcCGGCAGCAGCUgCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 3666 0.66 0.436282
Target:  5'- gGCCGGGaucgUGUCGUUugccggGugGUCGCCc-- -3'
miRNA:   3'- -CGGCCCg---GCAGCAG------CugCAGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 10786 0.66 0.435363
Target:  5'- uGCCGcuugcucGGCCGUCcgcaCGgauGCGUUGCCGUUc -3'
miRNA:   3'- -CGGC-------CCGGCAGca--GC---UGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35495 0.66 0.418114
Target:  5'- gGgCGGcgcGCUGcUCGUCGGCGcucacgccgCGCCGUCc -3'
miRNA:   3'- -CgGCC---CGGC-AGCAGCUGCa--------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35356 0.66 0.418114
Target:  5'- --aGGGgCGU-GUCGGgGcCGCCGUCg -3'
miRNA:   3'- cggCCCgGCAgCAGCUgCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 39202 0.66 0.400414
Target:  5'- cCCGGGCCGcggGUUGGCGa--CCGUCg -3'
miRNA:   3'- cGGCCCGGCag-CAGCUGCagcGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 929 0.66 0.400414
Target:  5'- aCCGGcGUcaCGUCGUCGAgGUCGCg--- -3'
miRNA:   3'- cGGCC-CG--GCAGCAGCUgCAGCGgcag -5'
26314 5' -61.3 NC_005345.2 + 44380 0.67 0.391744
Target:  5'- -aCGGGUCGcCGgCGAgGgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCaGCaGCUgCaGCGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.