miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 35356 0.66 0.418114
Target:  5'- --aGGGgCGU-GUCGGgGcCGCCGUCg -3'
miRNA:   3'- cggCCCgGCAgCAGCUgCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 35495 0.66 0.418114
Target:  5'- gGgCGGcgcGCUGcUCGUCGGCGcucacgccgCGCCGUCc -3'
miRNA:   3'- -CgGCC---CGGC-AGCAGCUGCa--------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 10786 0.66 0.435363
Target:  5'- uGCCGcuugcucGGCCGUCcgcaCGgauGCGUUGCCGUUc -3'
miRNA:   3'- -CGGC-------CCGGCAGca--GC---UGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3666 0.66 0.436282
Target:  5'- gGCCGGGaucgUGUCGUUugccggGugGUCGCCc-- -3'
miRNA:   3'- -CGGCCCg---GCAGCAG------CugCAGCGGcag -5'
26314 5' -61.3 NC_005345.2 + 37268 0.66 0.436282
Target:  5'- gGUCGcGUCGUCGUCGAgGg-GCaCGUCg -3'
miRNA:   3'- -CGGCcCGGCAGCAGCUgCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 8694 0.67 0.366482
Target:  5'- -aCGGGuuGUCGcCGAUGUCgaacgugcgcggGCCGaUCg -3'
miRNA:   3'- cgGCCCggCAGCaGCUGCAG------------CGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 37138 0.67 0.366482
Target:  5'- aGCCGGGCagCGUCGUCccgaguCGUuccUGCCGg- -3'
miRNA:   3'- -CGGCCCG--GCAGCAGcu----GCA---GCGGCag -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 8653 0.68 0.326934
Target:  5'- cUCGGcGCCGaUCGUCGcgGCGaucUCGCCGaUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCAGC--UGC---AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 23178 0.68 0.334584
Target:  5'- cCCGGG-CGUacccgaaccCGUCGAUGUCGuuGUg -3'
miRNA:   3'- cGGCCCgGCA---------GCAGCUGCAGCggCAg -5'
26314 5' -61.3 NC_005345.2 + 27126 0.68 0.340798
Target:  5'- gGCCGGGaCCGUC--CGGCGggcccggcaugcCGCCGUg -3'
miRNA:   3'- -CGGCCC-GGCAGcaGCUGCa-----------GCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 18926 0.68 0.342365
Target:  5'- cUCGcGGCuCG-CGUCGGCGUCGaCGUUg -3'
miRNA:   3'- cGGC-CCG-GCaGCAGCUGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 7960 0.67 0.350275
Target:  5'- gGCgGGGaucCCGUCgGUCGuCGUgucgUGCCGUCc -3'
miRNA:   3'- -CGgCCC---GGCAG-CAGCuGCA----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 27581 0.67 0.350275
Target:  5'- cGUCGGGCCGUC-UCGcgccaACGUgCGgCGUUc -3'
miRNA:   3'- -CGGCCCGGCAGcAGC-----UGCA-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 21451 0.67 0.350275
Target:  5'- uGCaGGGCUGccgUGUCGGCG-CGCCcgGUCa -3'
miRNA:   3'- -CGgCCCGGCa--GCAGCUGCaGCGG--CAG- -5'
26314 5' -61.3 NC_005345.2 + 16360 0.67 0.358315
Target:  5'- cGCCGaGCa-UCGccgCGGCGUCGCCGcUCu -3'
miRNA:   3'- -CGGCcCGgcAGCa--GCUGCAGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 44588 0.67 0.358315
Target:  5'- cUCGGGCagcaGUCGUacACGcUGCCGUCg -3'
miRNA:   3'- cGGCCCGg---CAGCAgcUGCaGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 39904 0.67 0.361566
Target:  5'- gGCCGcaCCGUgGUCGcggcguacgacuugaGCGUCGCCGg- -3'
miRNA:   3'- -CGGCccGGCAgCAGC---------------UGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 17975 0.67 0.366482
Target:  5'- uGCCGGGCCG-CGgccUCGAUcUC-CCGUg -3'
miRNA:   3'- -CGGCCCGGCaGC---AGCUGcAGcGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.