miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26314 5' -61.3 NC_005345.2 + 35871 0.68 0.312025
Target:  5'- gGUCGGGggcgUCGUCGcCGACGagcugcUCGCCGgUCg -3'
miRNA:   3'- -CGGCCC----GGCAGCaGCUGC------AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 16700 0.68 0.312025
Target:  5'- -gCGGGUCGUCcgugauGUCGAgGUagagcgUGCCGUCg -3'
miRNA:   3'- cgGCCCGGCAG------CAGCUgCA------GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 17188 0.68 0.307653
Target:  5'- aGUCGGcGCCuucccacagccucggGUUGUCGGUGUCGCCGg- -3'
miRNA:   3'- -CGGCC-CGG---------------CAGCAGCUGCAGCGGCag -5'
26314 5' -61.3 NC_005345.2 + 3146 0.68 0.304766
Target:  5'- aGCCGuGCCGacggCGUCGGCGa-GCuCGUCg -3'
miRNA:   3'- -CGGCcCGGCa---GCAGCUGCagCG-GCAG- -5'
26314 5' -61.3 NC_005345.2 + 15038 0.69 0.297637
Target:  5'- aUCGcGUCGgCGgCGAUGUCGCCGUCg -3'
miRNA:   3'- cGGCcCGGCaGCaGCUGCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 40704 0.69 0.295524
Target:  5'- gGCCGGuGCCGUcCGuccacaccgaccgcUCGGCGUCcaGCCG-Cg -3'
miRNA:   3'- -CGGCC-CGGCA-GC--------------AGCUGCAG--CGGCaG- -5'
26314 5' -61.3 NC_005345.2 + 31776 0.69 0.290638
Target:  5'- cUCGGGUgCGggGUCGACGcacucggguUCGCCGUCc -3'
miRNA:   3'- cGGCCCG-GCagCAGCUGC---------AGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 46611 0.69 0.283769
Target:  5'- uCgGGGCCGgCGcCGGgugcccCGUCGCCGUUg -3'
miRNA:   3'- cGgCCCGGCaGCaGCU------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 5189 0.68 0.317926
Target:  5'- cGCCGGGCUGcacgcaUCGgcacggccggccCGGCGcuacaCGCCGUCg -3'
miRNA:   3'- -CGGCCCGGC------AGCa-----------GCUGCa----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 19337 0.68 0.319414
Target:  5'- uGCCGGGCUGcUCGcCGggggcgagcGCGUaGUCGUCu -3'
miRNA:   3'- -CGGCCCGGC-AGCaGC---------UGCAgCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 27581 0.67 0.350275
Target:  5'- cGUCGGGCCGUC-UCGcgccaACGUgCGgCGUUc -3'
miRNA:   3'- -CGGCCCGGCAGcAGC-----UGCA-GCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 7960 0.67 0.350275
Target:  5'- gGCgGGGaucCCGUCgGUCGuCGUgucgUGCCGUCc -3'
miRNA:   3'- -CGgCCC---GGCAG-CAGCuGCA----GCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 18926 0.68 0.342365
Target:  5'- cUCGcGGCuCG-CGUCGGCGUCGaCGUUg -3'
miRNA:   3'- cGGC-CCG-GCaGCAGCUGCAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 27126 0.68 0.340798
Target:  5'- gGCCGGGaCCGUC--CGGCGggcccggcaugcCGCCGUg -3'
miRNA:   3'- -CGGCCC-GGCAGcaGCUGCa-----------GCGGCAg -5'
26314 5' -61.3 NC_005345.2 + 23178 0.68 0.334584
Target:  5'- cCCGGG-CGUacccgaaccCGUCGAUGUCGuuGUg -3'
miRNA:   3'- cGGCCCgGCA---------GCAGCUGCAGCggCAg -5'
26314 5' -61.3 NC_005345.2 + 8653 0.68 0.326934
Target:  5'- cUCGGcGCCGaUCGUCGcgGCGaucUCGCCGaUCg -3'
miRNA:   3'- cGGCC-CGGC-AGCAGC--UGC---AGCGGC-AG- -5'
26314 5' -61.3 NC_005345.2 + 29309 0.68 0.319414
Target:  5'- gGCCGGgaugccuggaaGCUGUCGgccgcccCGGgugucagcgcuCGUCGCCGUCg -3'
miRNA:   3'- -CGGCC-----------CGGCAGCa------GCU-----------GCAGCGGCAG- -5'
26314 5' -61.3 NC_005345.2 + 3903 0.68 0.319414
Target:  5'- gGCgGGGCggaCGUCGUCGuACagGUCGgUGUCg -3'
miRNA:   3'- -CGgCCCG---GCAGCAGC-UG--CAGCgGCAG- -5'
26314 5' -61.3 NC_005345.2 + 15314 0.66 0.445535
Target:  5'- cGCCcGGCUGUagGUCGguGCGUCgGCCGg- -3'
miRNA:   3'- -CGGcCCGGCAg-CAGC--UGCAG-CGGCag -5'
26314 5' -61.3 NC_005345.2 + 42474 0.79 0.051114
Target:  5'- cGCCGaGGCCGUCGUCGAgGagaUCGCCa-- -3'
miRNA:   3'- -CGGC-CCGGCAGCAGCUgC---AGCGGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.