miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 3' -59.4 NC_005345.2 + 29997 0.66 0.525185
Target:  5'- aCGGGCcCGG-CGaCGACgUCCCGgccgaggUCGc -3'
miRNA:   3'- -GCCCGcGCCaGC-GCUG-AGGGCaa-----AGC- -5'
26315 3' -59.4 NC_005345.2 + 10673 0.66 0.525185
Target:  5'- gGGGCGCGG-CGCGGgaagugCCCGc---- -3'
miRNA:   3'- gCCCGCGCCaGCGCUga----GGGCaaagc -5'
26315 3' -59.4 NC_005345.2 + 10408 0.66 0.515012
Target:  5'- cCGGGCGagGGUCGCcAC-CCCGg---- -3'
miRNA:   3'- -GCCCGCg-CCAGCGcUGaGGGCaaagc -5'
26315 3' -59.4 NC_005345.2 + 21439 0.66 0.504921
Target:  5'- uCGGGUaGgGGUUGCagGGCUgCCGUgUCGg -3'
miRNA:   3'- -GCCCG-CgCCAGCG--CUGAgGGCAaAGC- -5'
26315 3' -59.4 NC_005345.2 + 48899 0.66 0.504921
Target:  5'- gCGaGGUGCGGgcggCGaUGGCUCCCGa---- -3'
miRNA:   3'- -GC-CCGCGCCa---GC-GCUGAGGGCaaagc -5'
26315 3' -59.4 NC_005345.2 + 17128 0.66 0.494915
Target:  5'- cCGGauccaGCGCGGUCGCGACguuggUCgGgg-CGg -3'
miRNA:   3'- -GCC-----CGCGCCAGCGCUGa----GGgCaaaGC- -5'
26315 3' -59.4 NC_005345.2 + 26776 0.66 0.485001
Target:  5'- gCGGGUGCGGcggaUCGUGGCcggCgCCGcgUCGc -3'
miRNA:   3'- -GCCCGCGCC----AGCGCUGa--G-GGCaaAGC- -5'
26315 3' -59.4 NC_005345.2 + 35937 0.66 0.481062
Target:  5'- gGGGCGCGGggugugcucgccgCGCGgGCUgCCGc-UCGg -3'
miRNA:   3'- gCCCGCGCCa------------GCGC-UGAgGGCaaAGC- -5'
26315 3' -59.4 NC_005345.2 + 13497 0.67 0.475183
Target:  5'- -cGGUGCGGUggCGCGGCgagcaCCCGUcgaUCGu -3'
miRNA:   3'- gcCCGCGCCA--GCGCUGa----GGGCAa--AGC- -5'
26315 3' -59.4 NC_005345.2 + 37505 0.67 0.470311
Target:  5'- cCGGGCGCGGgcugcggcgcggUGCGcucgcucuccgcccACUCCCGccagCGg -3'
miRNA:   3'- -GCCCGCGCCa-----------GCGC--------------UGAGGGCaaa-GC- -5'
26315 3' -59.4 NC_005345.2 + 35833 0.67 0.455851
Target:  5'- uCGGGCGaGGgCGCGGCggguggCUCGgUUCGg -3'
miRNA:   3'- -GCCCGCgCCaGCGCUGa-----GGGCaAAGC- -5'
26315 3' -59.4 NC_005345.2 + 37869 0.67 0.440694
Target:  5'- -cGGCGaggcucaggcccggaCGGUCGCGGCggugCCCGUcaCGg -3'
miRNA:   3'- gcCCGC---------------GCCAGCGCUGa---GGGCAaaGC- -5'
26315 3' -59.4 NC_005345.2 + 21657 0.67 0.43695
Target:  5'- uCGGGCGgGGUggggGUGACUCCCu----- -3'
miRNA:   3'- -GCCCGCgCCAg---CGCUGAGGGcaaagc -5'
26315 3' -59.4 NC_005345.2 + 41584 0.67 0.43695
Target:  5'- gCGGGCGUgcucGGUCGUGAUg-CCGUgcaCGg -3'
miRNA:   3'- -GCCCGCG----CCAGCGCUGagGGCAaa-GC- -5'
26315 3' -59.4 NC_005345.2 + 14428 0.68 0.383086
Target:  5'- cCGGGCGaucgaGGUCGCGcucugcucGCUCgCCGacUCGc -3'
miRNA:   3'- -GCCCGCg----CCAGCGC--------UGAG-GGCaaAGC- -5'
26315 3' -59.4 NC_005345.2 + 24966 0.68 0.374547
Target:  5'- aCGGGCGgcCGGUCGaguGGCaagugCCCGUcgUCGa -3'
miRNA:   3'- -GCCCGC--GCCAGCg--CUGa----GGGCAa-AGC- -5'
26315 3' -59.4 NC_005345.2 + 19339 0.68 0.374547
Target:  5'- gCGGGCcCGGUUG-GACUCCC---UCGg -3'
miRNA:   3'- -GCCCGcGCCAGCgCUGAGGGcaaAGC- -5'
26315 3' -59.4 NC_005345.2 + 31962 0.69 0.341701
Target:  5'- gCGGGUGCGGgUGCGGCUgguacggcCUCGggUUCGa -3'
miRNA:   3'- -GCCCGCGCCaGCGCUGA--------GGGCa-AAGC- -5'
26315 3' -59.4 NC_005345.2 + 31191 0.69 0.326075
Target:  5'- uCGGGCGCGGcgggUGCGGCgggugcgcaCCCGggugCGg -3'
miRNA:   3'- -GCCCGCGCCa---GCGCUGa--------GGGCaaa-GC- -5'
26315 3' -59.4 NC_005345.2 + 27347 0.7 0.310986
Target:  5'- gGGGCGCGGUacuuccgcCGuCGGCUgUCCGgcUCGa -3'
miRNA:   3'- gCCCGCGCCA--------GC-GCUGA-GGGCaaAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.