miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 5' -52.3 NC_005345.2 + 3504 0.66 0.86225
Target:  5'- uCGCaGGCgAGGACGUCAUga---GCGa -3'
miRNA:   3'- -GCGcCUGgUCCUGCGGUAaaaagUGC- -5'
26315 5' -52.3 NC_005345.2 + 41582 0.66 0.853769
Target:  5'- uCGCGGGCguGcucggucguGAUGCCGUg---CACGg -3'
miRNA:   3'- -GCGCCUGguC---------CUGCGGUAaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 7615 0.66 0.853769
Target:  5'- uCGUcGACCAGGuCGCCGagacgcUCGCGc -3'
miRNA:   3'- -GCGcCUGGUCCuGCGGUaaaa--AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 38277 0.66 0.852044
Target:  5'- uGCGGGCaCGGGACGCgccgcg-UGCGg -3'
miRNA:   3'- gCGCCUG-GUCCUGCGguaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 6261 0.66 0.845045
Target:  5'- gGCGGuucuuccuCCGuGGGCGCCGggcgUCACc -3'
miRNA:   3'- gCGCCu-------GGU-CCUGCGGUaaaaAGUGc -5'
26315 5' -52.3 NC_005345.2 + 31288 0.66 0.839698
Target:  5'- gGCGGACCccgAGGAuuccCGCCGggcgcugcugCGCGg -3'
miRNA:   3'- gCGCCUGG---UCCU----GCGGUaaaaa-----GUGC- -5'
26315 5' -52.3 NC_005345.2 + 25086 0.66 0.836088
Target:  5'- uCGCGGACUGGGaaGCGgCGUUcgggcCGCGg -3'
miRNA:   3'- -GCGCCUGGUCC--UGCgGUAAaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 45869 0.66 0.826906
Target:  5'- gGCGGggaGCCc-GACGCCGUcgaUCACGg -3'
miRNA:   3'- gCGCC---UGGucCUGCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46573 0.66 0.826906
Target:  5'- uGCGGAgCAGGugGgUCAUgua-CACGc -3'
miRNA:   3'- gCGCCUgGUCCugC-GGUAaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 37096 0.66 0.823173
Target:  5'- gCGCGGgcugaACCAGGACGCgAUccggcagcucgUCGCc -3'
miRNA:   3'- -GCGCC-----UGGUCCUGCGgUAaaa--------AGUGc -5'
26315 5' -52.3 NC_005345.2 + 7245 0.67 0.808879
Target:  5'- cCGgGGACCGGGGCgGCCGaaccgacaagcgUCGCc -3'
miRNA:   3'- -GCgCCUGGUCCUG-CGGUaaaa--------AGUGc -5'
26315 5' -52.3 NC_005345.2 + 33718 0.67 0.80791
Target:  5'- uCGCGGGCgAGGuguACGCCAagggcUACGg -3'
miRNA:   3'- -GCGCCUGgUCC---UGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 22289 0.67 0.794149
Target:  5'- gGCGG-CCGGGGCGaCGUgggucgaggugUCGCGg -3'
miRNA:   3'- gCGCCuGGUCCUGCgGUAaaa--------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40758 0.68 0.767696
Target:  5'- gGCGGACCGuucGGcCGCCGgc---CGCGg -3'
miRNA:   3'- gCGCCUGGU---CCuGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40099 0.68 0.763534
Target:  5'- uCGCGGACCugcacgagccggcGGuCGCCGUccUUCugGc -3'
miRNA:   3'- -GCGCCUGGu------------CCuGCGGUAaaAAGugC- -5'
26315 5' -52.3 NC_005345.2 + 4251 0.68 0.757248
Target:  5'- uGCGGAgCGGGACgagGCCAcgUUgcugcgccUCGCGa -3'
miRNA:   3'- gCGCCUgGUCCUG---CGGUaaAA--------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 24665 0.69 0.714241
Target:  5'- cCGCGGGcCCGGGACcgGCCGUcgaugaUCGCc -3'
miRNA:   3'- -GCGCCU-GGUCCUG--CGGUAaaa---AGUGc -5'
26315 5' -52.3 NC_005345.2 + 23619 0.69 0.713145
Target:  5'- gGCGGACCGGGcacggcuGCGCauggugUUCGCc -3'
miRNA:   3'- gCGCCUGGUCC-------UGCGguaaa-AAGUGc -5'
26315 5' -52.3 NC_005345.2 + 42093 0.69 0.703246
Target:  5'- aCGCGGcACCcucgaaAGGACGaCCGgagcgccgUUCACGa -3'
miRNA:   3'- -GCGCC-UGG------UCCUGC-GGUaaa-----AAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 28876 0.69 0.703246
Target:  5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3'
miRNA:   3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.