Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 32537 | 0.69 | 0.692179 |
Target: 5'- gCGCGGGuCCGGGcCGCCcgUcucUCACc -3' miRNA: 3'- -GCGCCU-GGUCCuGCGGuaAaa-AGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 10661 | 0.69 | 0.669876 |
Target: 5'- cCGCGGACCgguGGGGCGCgg-----CGCGg -3' miRNA: 3'- -GCGCCUGG---UCCUGCGguaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 24665 | 0.69 | 0.714241 |
Target: 5'- cCGCGGGcCCGGGACcgGCCGUcgaugaUCGCc -3' miRNA: 3'- -GCGCCU-GGUCCUG--CGGUAaaa---AGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 28876 | 0.69 | 0.703246 |
Target: 5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3' miRNA: 3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 46779 | 0.69 | 0.702143 |
Target: 5'- gCGCGcGACgGGGaggucacGCGCCGUUg--CGCGa -3' miRNA: 3'- -GCGC-CUGgUCC-------UGCGGUAAaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 21534 | 0.69 | 0.681052 |
Target: 5'- aGCGGACCGaucuCGCCGUgc-UCGCGc -3' miRNA: 3'- gCGCCUGGUccu-GCGGUAaaaAGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 48567 | 0.7 | 0.647424 |
Target: 5'- uCGCGGAUgcGGGCGCCGaugagcUCGCGg -3' miRNA: 3'- -GCGCCUGguCCUGCGGUaaaa--AGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 46075 | 0.7 | 0.613661 |
Target: 5'- gGCGG-CCGGGGcCGCCGgggccugCGCGg -3' miRNA: 3'- gCGCCuGGUCCU-GCGGUaaaaa--GUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 27687 | 0.71 | 0.55785 |
Target: 5'- cCGCGuGACCGGGcGCGCCGa----CACGg -3' miRNA: 3'- -GCGC-CUGGUCC-UGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 40255 | 0.71 | 0.59122 |
Target: 5'- aGCGGGgaCGGGGCGCCGgcgggCAUGa -3' miRNA: 3'- gCGCCUg-GUCCUGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 24642 | 0.72 | 0.509972 |
Target: 5'- uGCGGGCCGGGuugguCGCCGaucgagcggcUCACGg -3' miRNA: 3'- gCGCCUGGUCCu----GCGGUaaaa------AGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 13787 | 0.73 | 0.451712 |
Target: 5'- aCGCGGGCUugAGGACGCUGUUc--CACa -3' miRNA: 3'- -GCGCCUGG--UCCUGCGGUAAaaaGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 42950 | 0.73 | 0.451712 |
Target: 5'- gGUGG-CCAGGGCGCCGcggaacgCGCGg -3' miRNA: 3'- gCGCCuGGUCCUGCGGUaaaaa--GUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 25845 | 0.73 | 0.441691 |
Target: 5'- aCGCGGACCgAGGACaacgGCCGgccgUCGCc -3' miRNA: 3'- -GCGCCUGG-UCCUG----CGGUaaaaAGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 19257 | 0.73 | 0.459817 |
Target: 5'- gCGCaGGACCGGGAUGCCGacggcggcCGCGu -3' miRNA: 3'- -GCG-CCUGGUCCUGCGGUaaaaa---GUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 8492 | 1.09 | 0.001847 |
Target: 5'- cCGCGGACCAGGACGCCAUUUUUCACGu -3' miRNA: 3'- -GCGCCUGGUCCUGCGGUAAAAAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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