miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 5' -52.3 NC_005345.2 + 8492 1.09 0.001847
Target:  5'- cCGCGGACCAGGACGCCAUUUUUCACGu -3'
miRNA:   3'- -GCGCCUGGUCCUGCGGUAAAAAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 42950 0.73 0.451712
Target:  5'- gGUGG-CCAGGGCGCCGcggaacgCGCGg -3'
miRNA:   3'- gCGCCuGGUCCUGCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 25845 0.73 0.441691
Target:  5'- aCGCGGACCgAGGACaacgGCCGgccgUCGCc -3'
miRNA:   3'- -GCGCCUGG-UCCUG----CGGUaaaaAGUGc -5'
26315 5' -52.3 NC_005345.2 + 13787 0.73 0.451712
Target:  5'- aCGCGGGCUugAGGACGCUGUUc--CACa -3'
miRNA:   3'- -GCGCCUGG--UCCUGCGGUAAaaaGUGc -5'
26315 5' -52.3 NC_005345.2 + 19257 0.73 0.459817
Target:  5'- gCGCaGGACCGGGAUGCCGacggcggcCGCGu -3'
miRNA:   3'- -GCG-CCUGGUCCUGCGGUaaaaa---GUGC- -5'
26315 5' -52.3 NC_005345.2 + 24642 0.72 0.509972
Target:  5'- uGCGGGCCGGGuugguCGCCGaucgagcggcUCACGg -3'
miRNA:   3'- gCGCCUGGUCCu----GCGGUaaaa------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 27687 0.71 0.55785
Target:  5'- cCGCGuGACCGGGcGCGCCGa----CACGg -3'
miRNA:   3'- -GCGC-CUGGUCC-UGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40255 0.71 0.59122
Target:  5'- aGCGGGgaCGGGGCGCCGgcgggCAUGa -3'
miRNA:   3'- gCGCCUg-GUCCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 48567 0.7 0.647424
Target:  5'- uCGCGGAUgcGGGCGCCGaugagcUCGCGg -3'
miRNA:   3'- -GCGCCUGguCCUGCGGUaaaa--AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46075 0.7 0.613661
Target:  5'- gGCGG-CCGGGGcCGCCGgggccugCGCGg -3'
miRNA:   3'- gCGCCuGGUCCU-GCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 21534 0.69 0.681052
Target:  5'- aGCGGACCGaucuCGCCGUgc-UCGCGc -3'
miRNA:   3'- gCGCCUGGUccu-GCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46779 0.69 0.702143
Target:  5'- gCGCGcGACgGGGaggucacGCGCCGUUg--CGCGa -3'
miRNA:   3'- -GCGC-CUGgUCC-------UGCGGUAAaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 32537 0.69 0.692179
Target:  5'- gCGCGGGuCCGGGcCGCCcgUcucUCACc -3'
miRNA:   3'- -GCGCCU-GGUCCuGCGGuaAaa-AGUGc -5'
26315 5' -52.3 NC_005345.2 + 42093 0.69 0.703246
Target:  5'- aCGCGGcACCcucgaaAGGACGaCCGgagcgccgUUCACGa -3'
miRNA:   3'- -GCGCC-UGG------UCCUGC-GGUaaa-----AAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 31764 0.69 0.703246
Target:  5'- cCGCGGACCAccgcGGACGgCAccgagUACGa -3'
miRNA:   3'- -GCGCCUGGU----CCUGCgGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 23619 0.69 0.713145
Target:  5'- gGCGGACCGGGcacggcuGCGCauggugUUCGCc -3'
miRNA:   3'- gCGCCUGGUCC-------UGCGguaaa-AAGUGc -5'
26315 5' -52.3 NC_005345.2 + 24665 0.69 0.714241
Target:  5'- cCGCGGGcCCGGGACcgGCCGUcgaugaUCGCc -3'
miRNA:   3'- -GCGCCU-GGUCCUG--CGGUAaaa---AGUGc -5'
26315 5' -52.3 NC_005345.2 + 36874 0.69 0.703246
Target:  5'- aGCGGACCAGGuCGgCGUacggUC-CGa -3'
miRNA:   3'- gCGCCUGGUCCuGCgGUAaaa-AGuGC- -5'
26315 5' -52.3 NC_005345.2 + 28876 0.69 0.703246
Target:  5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3'
miRNA:   3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 10661 0.69 0.669876
Target:  5'- cCGCGGACCgguGGGGCGCgg-----CGCGg -3'
miRNA:   3'- -GCGCCUGG---UCCUGCGguaaaaaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.