miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 5' -52.3 NC_005345.2 + 3504 0.66 0.86225
Target:  5'- uCGCaGGCgAGGACGUCAUga---GCGa -3'
miRNA:   3'- -GCGcCUGgUCCUGCGGUAaaaagUGC- -5'
26315 5' -52.3 NC_005345.2 + 4251 0.68 0.757248
Target:  5'- uGCGGAgCGGGACgagGCCAcgUUgcugcgccUCGCGa -3'
miRNA:   3'- gCGCCUgGUCCUG---CGGUaaAA--------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 6261 0.66 0.845045
Target:  5'- gGCGGuucuuccuCCGuGGGCGCCGggcgUCACc -3'
miRNA:   3'- gCGCCu-------GGU-CCUGCGGUaaaaAGUGc -5'
26315 5' -52.3 NC_005345.2 + 7245 0.67 0.808879
Target:  5'- cCGgGGACCGGGGCgGCCGaaccgacaagcgUCGCc -3'
miRNA:   3'- -GCgCCUGGUCCUG-CGGUaaaa--------AGUGc -5'
26315 5' -52.3 NC_005345.2 + 7615 0.66 0.853769
Target:  5'- uCGUcGACCAGGuCGCCGagacgcUCGCGc -3'
miRNA:   3'- -GCGcCUGGUCCuGCGGUaaaa--AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 8492 1.09 0.001847
Target:  5'- cCGCGGACCAGGACGCCAUUUUUCACGu -3'
miRNA:   3'- -GCGCCUGGUCCUGCGGUAAAAAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 10661 0.69 0.669876
Target:  5'- cCGCGGACCgguGGGGCGCgg-----CGCGg -3'
miRNA:   3'- -GCGCCUGG---UCCUGCGguaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 13787 0.73 0.451712
Target:  5'- aCGCGGGCUugAGGACGCUGUUc--CACa -3'
miRNA:   3'- -GCGCCUGG--UCCUGCGGUAAaaaGUGc -5'
26315 5' -52.3 NC_005345.2 + 19257 0.73 0.459817
Target:  5'- gCGCaGGACCGGGAUGCCGacggcggcCGCGu -3'
miRNA:   3'- -GCG-CCUGGUCCUGCGGUaaaaa---GUGC- -5'
26315 5' -52.3 NC_005345.2 + 21534 0.69 0.681052
Target:  5'- aGCGGACCGaucuCGCCGUgc-UCGCGc -3'
miRNA:   3'- gCGCCUGGUccu-GCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 22289 0.67 0.794149
Target:  5'- gGCGG-CCGGGGCGaCGUgggucgaggugUCGCGg -3'
miRNA:   3'- gCGCCuGGUCCUGCgGUAaaa--------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 23619 0.69 0.713145
Target:  5'- gGCGGACCGGGcacggcuGCGCauggugUUCGCc -3'
miRNA:   3'- gCGCCUGGUCC-------UGCGguaaa-AAGUGc -5'
26315 5' -52.3 NC_005345.2 + 24642 0.72 0.509972
Target:  5'- uGCGGGCCGGGuugguCGCCGaucgagcggcUCACGg -3'
miRNA:   3'- gCGCCUGGUCCu----GCGGUaaaa------AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 24665 0.69 0.714241
Target:  5'- cCGCGGGcCCGGGACcgGCCGUcgaugaUCGCc -3'
miRNA:   3'- -GCGCCU-GGUCCUG--CGGUAaaa---AGUGc -5'
26315 5' -52.3 NC_005345.2 + 25086 0.66 0.836088
Target:  5'- uCGCGGACUGGGaaGCGgCGUUcgggcCGCGg -3'
miRNA:   3'- -GCGCCUGGUCC--UGCgGUAAaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 25845 0.73 0.441691
Target:  5'- aCGCGGACCgAGGACaacgGCCGgccgUCGCc -3'
miRNA:   3'- -GCGCCUGG-UCCUG----CGGUaaaaAGUGc -5'
26315 5' -52.3 NC_005345.2 + 27687 0.71 0.55785
Target:  5'- cCGCGuGACCGGGcGCGCCGa----CACGg -3'
miRNA:   3'- -GCGC-CUGGUCC-UGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 28876 0.69 0.703246
Target:  5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3'
miRNA:   3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 31288 0.66 0.839698
Target:  5'- gGCGGACCccgAGGAuuccCGCCGggcgcugcugCGCGg -3'
miRNA:   3'- gCGCCUGG---UCCU----GCGGUaaaaa-----GUGC- -5'
26315 5' -52.3 NC_005345.2 + 31764 0.69 0.703246
Target:  5'- cCGCGGACCAccgcGGACGgCAccgagUACGa -3'
miRNA:   3'- -GCGCCUGGU----CCUGCgGUaaaaaGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.