Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 32537 | 0.69 | 0.692179 |
Target: 5'- gCGCGGGuCCGGGcCGCCcgUcucUCACc -3' miRNA: 3'- -GCGCCU-GGUCCuGCGGuaAaa-AGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 33718 | 0.67 | 0.80791 |
Target: 5'- uCGCGGGCgAGGuguACGCCAagggcUACGg -3' miRNA: 3'- -GCGCCUGgUCC---UGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 36874 | 0.69 | 0.703246 |
Target: 5'- aGCGGACCAGGuCGgCGUacggUC-CGa -3' miRNA: 3'- gCGCCUGGUCCuGCgGUAaaa-AGuGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 37096 | 0.66 | 0.823173 |
Target: 5'- gCGCGGgcugaACCAGGACGCgAUccggcagcucgUCGCc -3' miRNA: 3'- -GCGCC-----UGGUCCUGCGgUAaaa--------AGUGc -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 38277 | 0.66 | 0.852044 |
Target: 5'- uGCGGGCaCGGGACGCgccgcg-UGCGg -3' miRNA: 3'- gCGCCUG-GUCCUGCGguaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 40099 | 0.68 | 0.763534 |
Target: 5'- uCGCGGACCugcacgagccggcGGuCGCCGUccUUCugGc -3' miRNA: 3'- -GCGCCUGGu------------CCuGCGGUAaaAAGugC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 40255 | 0.71 | 0.59122 |
Target: 5'- aGCGGGgaCGGGGCGCCGgcgggCAUGa -3' miRNA: 3'- gCGCCUg-GUCCUGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 40758 | 0.68 | 0.767696 |
Target: 5'- gGCGGACCGuucGGcCGCCGgc---CGCGg -3' miRNA: 3'- gCGCCUGGU---CCuGCGGUaaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 41582 | 0.66 | 0.853769 |
Target: 5'- uCGCGGGCguGcucggucguGAUGCCGUg---CACGg -3' miRNA: 3'- -GCGCCUGguC---------CUGCGGUAaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 42093 | 0.69 | 0.703246 |
Target: 5'- aCGCGGcACCcucgaaAGGACGaCCGgagcgccgUUCACGa -3' miRNA: 3'- -GCGCC-UGG------UCCUGC-GGUaaa-----AAGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 42950 | 0.73 | 0.451712 |
Target: 5'- gGUGG-CCAGGGCGCCGcggaacgCGCGg -3' miRNA: 3'- gCGCCuGGUCCUGCGGUaaaaa--GUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 45869 | 0.66 | 0.826906 |
Target: 5'- gGCGGggaGCCc-GACGCCGUcgaUCACGg -3' miRNA: 3'- gCGCC---UGGucCUGCGGUAaaaAGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 46075 | 0.7 | 0.613661 |
Target: 5'- gGCGG-CCGGGGcCGCCGgggccugCGCGg -3' miRNA: 3'- gCGCCuGGUCCU-GCGGUaaaaa--GUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 46573 | 0.66 | 0.826906 |
Target: 5'- uGCGGAgCAGGugGgUCAUgua-CACGc -3' miRNA: 3'- gCGCCUgGUCCugC-GGUAaaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 46779 | 0.69 | 0.702143 |
Target: 5'- gCGCGcGACgGGGaggucacGCGCCGUUg--CGCGa -3' miRNA: 3'- -GCGC-CUGgUCC-------UGCGGUAAaaaGUGC- -5' |
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26315 | 5' | -52.3 | NC_005345.2 | + | 48567 | 0.7 | 0.647424 |
Target: 5'- uCGCGGAUgcGGGCGCCGaugagcUCGCGg -3' miRNA: 3'- -GCGCCUGguCCUGCGGUaaaa--AGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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