miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 5' -52.3 NC_005345.2 + 48567 0.7 0.647424
Target:  5'- uCGCGGAUgcGGGCGCCGaugagcUCGCGg -3'
miRNA:   3'- -GCGCCUGguCCUGCGGUaaaa--AGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46779 0.69 0.702143
Target:  5'- gCGCGcGACgGGGaggucacGCGCCGUUg--CGCGa -3'
miRNA:   3'- -GCGC-CUGgUCC-------UGCGGUAAaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46573 0.66 0.826906
Target:  5'- uGCGGAgCAGGugGgUCAUgua-CACGc -3'
miRNA:   3'- gCGCCUgGUCCugC-GGUAaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46075 0.7 0.613661
Target:  5'- gGCGG-CCGGGGcCGCCGgggccugCGCGg -3'
miRNA:   3'- gCGCCuGGUCCU-GCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 45869 0.66 0.826906
Target:  5'- gGCGGggaGCCc-GACGCCGUcgaUCACGg -3'
miRNA:   3'- gCGCC---UGGucCUGCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 42950 0.73 0.451712
Target:  5'- gGUGG-CCAGGGCGCCGcggaacgCGCGg -3'
miRNA:   3'- gCGCCuGGUCCUGCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 42093 0.69 0.703246
Target:  5'- aCGCGGcACCcucgaaAGGACGaCCGgagcgccgUUCACGa -3'
miRNA:   3'- -GCGCC-UGG------UCCUGC-GGUaaa-----AAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 41582 0.66 0.853769
Target:  5'- uCGCGGGCguGcucggucguGAUGCCGUg---CACGg -3'
miRNA:   3'- -GCGCCUGguC---------CUGCGGUAaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40758 0.68 0.767696
Target:  5'- gGCGGACCGuucGGcCGCCGgc---CGCGg -3'
miRNA:   3'- gCGCCUGGU---CCuGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40255 0.71 0.59122
Target:  5'- aGCGGGgaCGGGGCGCCGgcgggCAUGa -3'
miRNA:   3'- gCGCCUg-GUCCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 40099 0.68 0.763534
Target:  5'- uCGCGGACCugcacgagccggcGGuCGCCGUccUUCugGc -3'
miRNA:   3'- -GCGCCUGGu------------CCuGCGGUAaaAAGugC- -5'
26315 5' -52.3 NC_005345.2 + 38277 0.66 0.852044
Target:  5'- uGCGGGCaCGGGACGCgccgcg-UGCGg -3'
miRNA:   3'- gCGCCUG-GUCCUGCGguaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 37096 0.66 0.823173
Target:  5'- gCGCGGgcugaACCAGGACGCgAUccggcagcucgUCGCc -3'
miRNA:   3'- -GCGCC-----UGGUCCUGCGgUAaaa--------AGUGc -5'
26315 5' -52.3 NC_005345.2 + 36874 0.69 0.703246
Target:  5'- aGCGGACCAGGuCGgCGUacggUC-CGa -3'
miRNA:   3'- gCGCCUGGUCCuGCgGUAaaa-AGuGC- -5'
26315 5' -52.3 NC_005345.2 + 33718 0.67 0.80791
Target:  5'- uCGCGGGCgAGGuguACGCCAagggcUACGg -3'
miRNA:   3'- -GCGCCUGgUCC---UGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 32537 0.69 0.692179
Target:  5'- gCGCGGGuCCGGGcCGCCcgUcucUCACc -3'
miRNA:   3'- -GCGCCU-GGUCCuGCGGuaAaa-AGUGc -5'
26315 5' -52.3 NC_005345.2 + 31764 0.69 0.703246
Target:  5'- cCGCGGACCAccgcGGACGgCAccgagUACGa -3'
miRNA:   3'- -GCGCCUGGU----CCUGCgGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 31288 0.66 0.839698
Target:  5'- gGCGGACCccgAGGAuuccCGCCGggcgcugcugCGCGg -3'
miRNA:   3'- gCGCCUGG---UCCU----GCGGUaaaaa-----GUGC- -5'
26315 5' -52.3 NC_005345.2 + 28876 0.69 0.703246
Target:  5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3'
miRNA:   3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 27687 0.71 0.55785
Target:  5'- cCGCGuGACCGGGcGCGCCGa----CACGg -3'
miRNA:   3'- -GCGC-CUGGUCC-UGCGGUaaaaaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.