miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26315 5' -52.3 NC_005345.2 + 46573 0.66 0.826906
Target:  5'- uGCGGAgCAGGugGgUCAUgua-CACGc -3'
miRNA:   3'- gCGCCUgGUCCugC-GGUAaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 45869 0.66 0.826906
Target:  5'- gGCGGggaGCCc-GACGCCGUcgaUCACGg -3'
miRNA:   3'- gCGCC---UGGucCUGCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 7245 0.67 0.808879
Target:  5'- cCGgGGACCGGGGCgGCCGaaccgacaagcgUCGCc -3'
miRNA:   3'- -GCgCCUGGUCCUG-CGGUaaaa--------AGUGc -5'
26315 5' -52.3 NC_005345.2 + 40099 0.68 0.763534
Target:  5'- uCGCGGACCugcacgagccggcGGuCGCCGUccUUCugGc -3'
miRNA:   3'- -GCGCCUGGu------------CCuGCGGUAaaAAGugC- -5'
26315 5' -52.3 NC_005345.2 + 24665 0.69 0.714241
Target:  5'- cCGCGGGcCCGGGACcgGCCGUcgaugaUCGCc -3'
miRNA:   3'- -GCGCCU-GGUCCUG--CGGUAaaa---AGUGc -5'
26315 5' -52.3 NC_005345.2 + 36874 0.69 0.703246
Target:  5'- aGCGGACCAGGuCGgCGUacggUC-CGa -3'
miRNA:   3'- gCGCCUGGUCCuGCgGUAaaa-AGuGC- -5'
26315 5' -52.3 NC_005345.2 + 28876 0.69 0.703246
Target:  5'- gGCGGGCacuacGGGCGCCAcug--CGCGa -3'
miRNA:   3'- gCGCCUGgu---CCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46779 0.69 0.702143
Target:  5'- gCGCGcGACgGGGaggucacGCGCCGUUg--CGCGa -3'
miRNA:   3'- -GCGC-CUGgUCC-------UGCGGUAAaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 21534 0.69 0.681052
Target:  5'- aGCGGACCGaucuCGCCGUgc-UCGCGc -3'
miRNA:   3'- gCGCCUGGUccu-GCGGUAaaaAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 46075 0.7 0.613661
Target:  5'- gGCGG-CCGGGGcCGCCGgggccugCGCGg -3'
miRNA:   3'- gCGCCuGGUCCU-GCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 40255 0.71 0.59122
Target:  5'- aGCGGGgaCGGGGCGCCGgcgggCAUGa -3'
miRNA:   3'- gCGCCUg-GUCCUGCGGUaaaaaGUGC- -5'
26315 5' -52.3 NC_005345.2 + 19257 0.73 0.459817
Target:  5'- gCGCaGGACCGGGAUGCCGacggcggcCGCGu -3'
miRNA:   3'- -GCG-CCUGGUCCUGCGGUaaaaa---GUGC- -5'
26315 5' -52.3 NC_005345.2 + 13787 0.73 0.451712
Target:  5'- aCGCGGGCUugAGGACGCUGUUc--CACa -3'
miRNA:   3'- -GCGCCUGG--UCCUGCGGUAAaaaGUGc -5'
26315 5' -52.3 NC_005345.2 + 42950 0.73 0.451712
Target:  5'- gGUGG-CCAGGGCGCCGcggaacgCGCGg -3'
miRNA:   3'- gCGCCuGGUCCUGCGGUaaaaa--GUGC- -5'
26315 5' -52.3 NC_005345.2 + 8492 1.09 0.001847
Target:  5'- cCGCGGACCAGGACGCCAUUUUUCACGu -3'
miRNA:   3'- -GCGCCUGGUCCUGCGGUAAAAAGUGC- -5'
26315 5' -52.3 NC_005345.2 + 41582 0.66 0.853769
Target:  5'- uCGCGGGCguGcucggucguGAUGCCGUg---CACGg -3'
miRNA:   3'- -GCGCCUGguC---------CUGCGGUAaaaaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.