Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 37096 | 0.66 | 0.823173 |
Target: 5'- gCGCGGgcugaACCAGGACGCgAUccggcagcucgUCGCc -3' miRNA: 3'- -GCGCC-----UGGUCCUGCGgUAaaa--------AGUGc -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 25086 | 0.66 | 0.836088 |
Target: 5'- uCGCGGACUGGGaaGCGgCGUUcgggcCGCGg -3' miRNA: 3'- -GCGCCUGGUCC--UGCgGUAAaaa--GUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 31288 | 0.66 | 0.839698 |
Target: 5'- gGCGGACCccgAGGAuuccCGCCGggcgcugcugCGCGg -3' miRNA: 3'- gCGCCUGG---UCCU----GCGGUaaaaa-----GUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 6261 | 0.66 | 0.845045 |
Target: 5'- gGCGGuucuuccuCCGuGGGCGCCGggcgUCACc -3' miRNA: 3'- gCGCCu-------GGU-CCUGCGGUaaaaAGUGc -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 7615 | 0.66 | 0.853769 |
Target: 5'- uCGUcGACCAGGuCGCCGagacgcUCGCGc -3' miRNA: 3'- -GCGcCUGGUCCuGCGGUaaaa--AGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 4251 | 0.68 | 0.757248 |
Target: 5'- uGCGGAgCGGGACgagGCCAcgUUgcugcgccUCGCGa -3' miRNA: 3'- gCGCCUgGUCCUG---CGGUaaAA--------AGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 23619 | 0.69 | 0.713145 |
Target: 5'- gGCGGACCGGGcacggcuGCGCauggugUUCGCc -3' miRNA: 3'- gCGCCUGGUCC-------UGCGguaaa-AAGUGc -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 25845 | 0.73 | 0.441691 |
Target: 5'- aCGCGGACCgAGGACaacgGCCGgccgUCGCc -3' miRNA: 3'- -GCGCCUGG-UCCUG----CGGUaaaaAGUGc -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 24642 | 0.72 | 0.509972 |
Target: 5'- uGCGGGCCGGGuugguCGCCGaucgagcggcUCACGg -3' miRNA: 3'- gCGCCUGGUCCu----GCGGUaaaa------AGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 27687 | 0.71 | 0.55785 |
Target: 5'- cCGCGuGACCGGGcGCGCCGa----CACGg -3' miRNA: 3'- -GCGC-CUGGUCC-UGCGGUaaaaaGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 48567 | 0.7 | 0.647424 |
Target: 5'- uCGCGGAUgcGGGCGCCGaugagcUCGCGg -3' miRNA: 3'- -GCGCCUGguCCUGCGGUaaaa--AGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 10661 | 0.69 | 0.669876 |
Target: 5'- cCGCGGACCgguGGGGCGCgg-----CGCGg -3' miRNA: 3'- -GCGCCUGG---UCCUGCGguaaaaaGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 32537 | 0.69 | 0.692179 |
Target: 5'- gCGCGGGuCCGGGcCGCCcgUcucUCACc -3' miRNA: 3'- -GCGCCU-GGUCCuGCGGuaAaa-AGUGc -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 31764 | 0.69 | 0.703246 |
Target: 5'- cCGCGGACCAccgcGGACGgCAccgagUACGa -3' miRNA: 3'- -GCGCCUGGU----CCUGCgGUaaaaaGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 42093 | 0.69 | 0.703246 |
Target: 5'- aCGCGGcACCcucgaaAGGACGaCCGgagcgccgUUCACGa -3' miRNA: 3'- -GCGCC-UGG------UCCUGC-GGUaaa-----AAGUGC- -5' |
|||||||
26315 | 5' | -52.3 | NC_005345.2 | + | 3504 | 0.66 | 0.86225 |
Target: 5'- uCGCaGGCgAGGACGUCAUga---GCGa -3' miRNA: 3'- -GCGcCUGgUCCUGCGGUAaaaagUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home