miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 3' -62.5 NC_005345.2 + 10620 0.66 0.353113
Target:  5'- gGCCGGUCGGcccgggucgagcAGCaCgCGUgacucagggACCGCGGa -3'
miRNA:   3'- gCGGUCAGCC------------UCG-GgGCA---------UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 12647 0.66 0.353113
Target:  5'- uCGCCGGggcgCGGucGGCCgCCGUuggcguacCCGcCGGGu -3'
miRNA:   3'- -GCGGUCa---GCC--UCGG-GGCAu-------GGC-GCCC- -5'
26316 3' -62.5 NC_005345.2 + 31804 0.66 0.353113
Target:  5'- uCGCCguccgGGUCGGGGUCCgggaugcgugCGUGCacccgcgGCGGGu -3'
miRNA:   3'- -GCGG-----UCAGCCUCGGG----------GCAUGg------CGCCC- -5'
26316 3' -62.5 NC_005345.2 + 5229 0.66 0.353113
Target:  5'- aCGCC-GUCGGGGUgCCCGcgguacACgGUGGGc -3'
miRNA:   3'- -GCGGuCAGCCUCG-GGGCa-----UGgCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 21459 0.66 0.345194
Target:  5'- uGCCGuGUCGGcGCgCCCGgucaCGCGGc -3'
miRNA:   3'- gCGGU-CAGCCuCG-GGGCaug-GCGCCc -5'
26316 3' -62.5 NC_005345.2 + 43482 0.66 0.345194
Target:  5'- aGCgCGGUCGGcucGGUCCgGgcCCGcCGGGc -3'
miRNA:   3'- gCG-GUCAGCC---UCGGGgCauGGC-GCCC- -5'
26316 3' -62.5 NC_005345.2 + 24972 0.66 0.344409
Target:  5'- gGCCGGUCGaGuGGCaagugCCCGUcgucgaggugcucGCCGCGGu -3'
miRNA:   3'- gCGGUCAGC-C-UCG-----GGGCA-------------UGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 8822 0.67 0.337403
Target:  5'- aCGCCGGcCGG-GCUCgucUGCCGCGGc -3'
miRNA:   3'- -GCGGUCaGCCuCGGGgc-AUGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 16649 0.67 0.33586
Target:  5'- cCGCCGGcagagggacggcacCGGAGCgCCGUcagggggugacgaccGCCuGCGGGu -3'
miRNA:   3'- -GCGGUCa-------------GCCUCGgGGCA---------------UGG-CGCCC- -5'
26316 3' -62.5 NC_005345.2 + 13607 0.67 0.329741
Target:  5'- cCGCCGG-CGGuGCCCgaGccCCGCGaGGa -3'
miRNA:   3'- -GCGGUCaGCCuCGGGg-CauGGCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 25657 0.67 0.328982
Target:  5'- uGCCAGUCGGAcgaGCCgaagugaUCGgcCUGCGGc -3'
miRNA:   3'- gCGGUCAGCCU---CGG-------GGCauGGCGCCc -5'
26316 3' -62.5 NC_005345.2 + 36782 0.67 0.328982
Target:  5'- cCGCUGcgaggcGUCGG-GCCCCGUGCagccgauUGCGGa -3'
miRNA:   3'- -GCGGU------CAGCCuCGGGGCAUG-------GCGCCc -5'
26316 3' -62.5 NC_005345.2 + 9306 0.67 0.328982
Target:  5'- uGCCAGgugCGGccggccgAGCCCgCGaUGCCGaGGGu -3'
miRNA:   3'- gCGGUCa--GCC-------UCGGG-GC-AUGGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 30103 0.67 0.322208
Target:  5'- gGCCGGguUCGccGAcCCCCGUACCGaCGGc -3'
miRNA:   3'- gCGGUC--AGC--CUcGGGGCAUGGC-GCCc -5'
26316 3' -62.5 NC_005345.2 + 47917 0.67 0.322208
Target:  5'- cCGCCGGaaagCcauGGGaCCCGUACCGCGcGGc -3'
miRNA:   3'- -GCGGUCa---Gc--CUCgGGGCAUGGCGC-CC- -5'
26316 3' -62.5 NC_005345.2 + 37691 0.67 0.322208
Target:  5'- uCGUCGGcCGuGGGCCgCCaGUcCUGCGGGa -3'
miRNA:   3'- -GCGGUCaGC-CUCGG-GG-CAuGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 21686 0.67 0.314804
Target:  5'- cCGCCccccUCaGGGCCCgggagGUGCUGCGGGg -3'
miRNA:   3'- -GCGGuc--AGcCUCGGGg----CAUGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 48824 0.67 0.314804
Target:  5'- gGUCAGagCGGAgccGCCCCGccccuuCCGgGGGg -3'
miRNA:   3'- gCGGUCa-GCCU---CGGGGCau----GGCgCCC- -5'
26316 3' -62.5 NC_005345.2 + 20290 0.67 0.30753
Target:  5'- uGCCcGcCGaaGAGcCCCCGgacgACUGCGGGa -3'
miRNA:   3'- gCGGuCaGC--CUC-GGGGCa---UGGCGCCC- -5'
26316 3' -62.5 NC_005345.2 + 23571 0.67 0.30753
Target:  5'- gGCCGcGUCcGAGCUgCG-GCUGCGGGu -3'
miRNA:   3'- gCGGU-CAGcCUCGGgGCaUGGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.