miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26316 5' -55.9 NC_005345.2 + 41579 0.66 0.676796
Target:  5'- uGCUCGCGg--GCGuGCUcGGUCGUGa -3'
miRNA:   3'- cCGGGCGCauuUGU-CGGaCCAGCACa -5'
26316 5' -55.9 NC_005345.2 + 18575 0.66 0.676796
Target:  5'- cGCCCaGCGUcggGAACAccGCCgGGUCGa-- -3'
miRNA:   3'- cCGGG-CGCA---UUUGU--CGGaCCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 7042 0.66 0.676796
Target:  5'- cGGCCgGCGaucgAGGCGGCCcGGcCGg-- -3'
miRNA:   3'- -CCGGgCGCa---UUUGUCGGaCCaGCaca -5'
26316 5' -55.9 NC_005345.2 + 7991 0.66 0.665818
Target:  5'- cGUCCGCGUuGACGGUCUGcacaGUGg -3'
miRNA:   3'- cCGGGCGCAuUUGUCGGACcag-CACa -5'
26316 5' -55.9 NC_005345.2 + 47952 0.66 0.665818
Target:  5'- uGGCCCGCGggccGGACuGCCgagccgccCGUGUg -3'
miRNA:   3'- -CCGGGCGCa---UUUGuCGGacca----GCACA- -5'
26316 5' -55.9 NC_005345.2 + 10627 0.66 0.654809
Target:  5'- cGGCCCGgGUcGAGCAGCacg--CGUGa -3'
miRNA:   3'- -CCGGGCgCA-UUUGUCGgaccaGCACa -5'
26316 5' -55.9 NC_005345.2 + 47868 0.66 0.643779
Target:  5'- gGGCCCGgcgacgGUGAcguCGGCCggcgugcugUGGUCGUGc -3'
miRNA:   3'- -CCGGGCg-----CAUUu--GUCGG---------ACCAGCACa -5'
26316 5' -55.9 NC_005345.2 + 20531 0.66 0.632738
Target:  5'- cGGCCUGCGgcGACAcGCCcGGcaugcgcgauUCGgUGUg -3'
miRNA:   3'- -CCGGGCGCauUUGU-CGGaCC----------AGC-ACA- -5'
26316 5' -55.9 NC_005345.2 + 24958 0.66 0.632738
Target:  5'- cGGCCC-CGacGGGCGGCC-GGUCGaGUg -3'
miRNA:   3'- -CCGGGcGCa-UUUGUCGGaCCAGCaCA- -5'
26316 5' -55.9 NC_005345.2 + 36168 0.67 0.610665
Target:  5'- gGGUCCgGCGU--GCAGCgUUGGUCGccgGUg -3'
miRNA:   3'- -CCGGG-CGCAuuUGUCG-GACCAGCa--CA- -5'
26316 5' -55.9 NC_005345.2 + 39272 0.67 0.599651
Target:  5'- cGGCCCGCugcugcucGUcGAGCAGCCccUGcUCGUGc -3'
miRNA:   3'- -CCGGGCG--------CA-UUUGUCGG--ACcAGCACa -5'
26316 5' -55.9 NC_005345.2 + 24842 0.67 0.588666
Target:  5'- cGGCUCGCGcAAGCGGUCccgcGG-CGUGa -3'
miRNA:   3'- -CCGGGCGCaUUUGUCGGa---CCaGCACa -5'
26316 5' -55.9 NC_005345.2 + 39516 0.67 0.588666
Target:  5'- uGCCCGaGUGGACccGGCCgaucgagcaGGUCGUGc -3'
miRNA:   3'- cCGGGCgCAUUUG--UCGGa--------CCAGCACa -5'
26316 5' -55.9 NC_005345.2 + 11171 0.67 0.577717
Target:  5'- cGGCaCCccgGCGcAGguccGCAGCCUGGUCGa-- -3'
miRNA:   3'- -CCG-GG---CGCaUU----UGUCGGACCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 25476 0.67 0.576625
Target:  5'- cGGCCCGCccGAcCGGCCgcgacccUGGUCGg-- -3'
miRNA:   3'- -CCGGGCGcaUUuGUCGG-------ACCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 37433 0.67 0.566814
Target:  5'- uGGUaCGCGgcGGCGGCCcgcUGGUCGg-- -3'
miRNA:   3'- -CCGgGCGCauUUGUCGG---ACCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 8691 0.67 0.555963
Target:  5'- uGGCCgUGaCGUGGGCGGCCcGGcUGUGg -3'
miRNA:   3'- -CCGG-GC-GCAUUUGUCGGaCCaGCACa -5'
26316 5' -55.9 NC_005345.2 + 48341 0.68 0.545174
Target:  5'- cGGCCCccgggcgagcagGUGUAAGCgGGCCcGGUCGg-- -3'
miRNA:   3'- -CCGGG------------CGCAUUUG-UCGGaCCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 24499 0.69 0.451916
Target:  5'- gGGCCCGCG-GGAU--CCUGGUCGa-- -3'
miRNA:   3'- -CCGGGCGCaUUUGucGGACCAGCaca -5'
26316 5' -55.9 NC_005345.2 + 9160 0.69 0.442083
Target:  5'- cGGCgCGgGUGcACgGGCC-GGUCGUGUg -3'
miRNA:   3'- -CCGgGCgCAUuUG-UCGGaCCAGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.