Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26318 | 3' | -54.9 | NC_005345.2 | + | 31236 | 0.69 | 0.521629 |
Target: 5'- uGUACGgcgggUCCGGGGUcgggugcgcacucgGGUgcgcgggugcggGGGCGGGuGCg -3' miRNA: 3'- -CGUGUa----AGGCCCCA--------------UCA------------UCCGCUC-CG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 45468 | 0.69 | 0.546277 |
Target: 5'- -gACGgcggCCGGGGUGGgcaugucGGCGaAGGUg -3' miRNA: 3'- cgUGUaa--GGCCCCAUCau-----CCGC-UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 33360 | 0.7 | 0.452615 |
Target: 5'- gGCGCGaga-GGGGUGG-GGGCGGuGGCg -3' miRNA: 3'- -CGUGUaaggCCCCAUCaUCCGCU-CCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 1631 | 0.7 | 0.493266 |
Target: 5'- -aGCAUcCCGGGGgagGGU-GGC-AGGCa -3' miRNA: 3'- cgUGUAaGGCCCCa--UCAuCCGcUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 34896 | 0.71 | 0.413859 |
Target: 5'- aCACGUUCCGGGGgaucGUgcAGGCagcguGGGCc -3' miRNA: 3'- cGUGUAAGGCCCCau--CA--UCCGc----UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 39033 | 0.71 | 0.395263 |
Target: 5'- uGCGCGUcUCCGGGaaccggccGGUGGGCGcuacgcAGGCg -3' miRNA: 3'- -CGUGUA-AGGCCCca------UCAUCCGC------UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 12675 | 0.71 | 0.432985 |
Target: 5'- cGUACccgCCGGgucGGUuGUAGGCcGAGGCg -3' miRNA: 3'- -CGUGuaaGGCC---CCAuCAUCCG-CUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 32810 | 0.72 | 0.367528 |
Target: 5'- gGCGCGUUCCGcgaggcacucGGGaagcAGUGGGCcgaguucGAGGCg -3' miRNA: 3'- -CGUGUAAGGC----------CCCa---UCAUCCG-------CUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 16205 | 0.72 | 0.377215 |
Target: 5'- cGC-CGUgcUCCGucaGGaGGUGGGCGAGGCc -3' miRNA: 3'- -CGuGUA--AGGCc--CCaUCAUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 31448 | 0.73 | 0.34116 |
Target: 5'- aGCGCGggugcgaggcgCCGGGGUGcgGGuGUGAGGCg -3' miRNA: 3'- -CGUGUaa---------GGCCCCAUcaUC-CGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 6528 | 0.74 | 0.288219 |
Target: 5'- gGCACGgggCGGGGcg--GGGCGGGGCg -3' miRNA: 3'- -CGUGUaagGCCCCaucaUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 12456 | 0.75 | 0.240691 |
Target: 5'- cGCGCAgcUCgCGGGGc---AGGCGAGGCg -3' miRNA: 3'- -CGUGUa-AG-GCCCCaucaUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 32991 | 0.78 | 0.152103 |
Target: 5'- gGCGCAggcggCCGGGGUGGcggGGGCGucgacgaucGGGCu -3' miRNA: 3'- -CGUGUaa---GGCCCCAUCa--UCCGC---------UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 35090 | 0.79 | 0.136072 |
Target: 5'- uGCAgGUUCuCGGcGGUGGUgcGGGCGuGGCg -3' miRNA: 3'- -CGUgUAAG-GCC-CCAUCA--UCCGCuCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 7584 | 1.13 | 0.000556 |
Target: 5'- gGCACAUUCCGGGGUAGUAGGCGAGGCc -3' miRNA: 3'- -CGUGUAAGGCCCCAUCAUCCGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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