miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26318 3' -54.9 NC_005345.2 + 7584 1.13 0.000556
Target:  5'- gGCACAUUCCGGGGUAGUAGGCGAGGCc -3'
miRNA:   3'- -CGUGUAAGGCCCCAUCAUCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 35090 0.79 0.136072
Target:  5'- uGCAgGUUCuCGGcGGUGGUgcGGGCGuGGCg -3'
miRNA:   3'- -CGUgUAAG-GCC-CCAUCA--UCCGCuCCG- -5'
26318 3' -54.9 NC_005345.2 + 32991 0.78 0.152103
Target:  5'- gGCGCAggcggCCGGGGUGGcggGGGCGucgacgaucGGGCu -3'
miRNA:   3'- -CGUGUaa---GGCCCCAUCa--UCCGC---------UCCG- -5'
26318 3' -54.9 NC_005345.2 + 12456 0.75 0.240691
Target:  5'- cGCGCAgcUCgCGGGGc---AGGCGAGGCg -3'
miRNA:   3'- -CGUGUa-AG-GCCCCaucaUCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 6528 0.74 0.288219
Target:  5'- gGCACGgggCGGGGcg--GGGCGGGGCg -3'
miRNA:   3'- -CGUGUaagGCCCCaucaUCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 31448 0.73 0.34116
Target:  5'- aGCGCGggugcgaggcgCCGGGGUGcgGGuGUGAGGCg -3'
miRNA:   3'- -CGUGUaa---------GGCCCCAUcaUC-CGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 32810 0.72 0.367528
Target:  5'- gGCGCGUUCCGcgaggcacucGGGaagcAGUGGGCcgaguucGAGGCg -3'
miRNA:   3'- -CGUGUAAGGC----------CCCa---UCAUCCG-------CUCCG- -5'
26318 3' -54.9 NC_005345.2 + 16205 0.72 0.377215
Target:  5'- cGC-CGUgcUCCGucaGGaGGUGGGCGAGGCc -3'
miRNA:   3'- -CGuGUA--AGGCc--CCaUCAUCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 39033 0.71 0.395263
Target:  5'- uGCGCGUcUCCGGGaaccggccGGUGGGCGcuacgcAGGCg -3'
miRNA:   3'- -CGUGUA-AGGCCCca------UCAUCCGC------UCCG- -5'
26318 3' -54.9 NC_005345.2 + 34896 0.71 0.413859
Target:  5'- aCACGUUCCGGGGgaucGUgcAGGCagcguGGGCc -3'
miRNA:   3'- cGUGUAAGGCCCCau--CA--UCCGc----UCCG- -5'
26318 3' -54.9 NC_005345.2 + 12675 0.71 0.432985
Target:  5'- cGUACccgCCGGgucGGUuGUAGGCcGAGGCg -3'
miRNA:   3'- -CGUGuaaGGCC---CCAuCAUCCG-CUCCG- -5'
26318 3' -54.9 NC_005345.2 + 1631 0.7 0.493266
Target:  5'- -aGCAUcCCGGGGgagGGU-GGC-AGGCa -3'
miRNA:   3'- cgUGUAaGGCCCCa--UCAuCCGcUCCG- -5'
26318 3' -54.9 NC_005345.2 + 33360 0.7 0.452615
Target:  5'- gGCGCGaga-GGGGUGG-GGGCGGuGGCg -3'
miRNA:   3'- -CGUGUaaggCCCCAUCaUCCGCU-CCG- -5'
26318 3' -54.9 NC_005345.2 + 5227 0.69 0.502645
Target:  5'- aCACGccgUCGGGGUgcccgcgguacacGGUGGGCGugacGGGCg -3'
miRNA:   3'- cGUGUaa-GGCCCCA-------------UCAUCCGC----UCCG- -5'
26318 3' -54.9 NC_005345.2 + 28672 0.69 0.503692
Target:  5'- aCACgg-UCGGGGccacAGGCGAGGCg -3'
miRNA:   3'- cGUGuaaGGCCCCaucaUCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 36201 0.69 0.513156
Target:  5'- uGCGCGUcggacaCGGGGUaccucuucugucgGGUacGGGCGAGGg -3'
miRNA:   3'- -CGUGUAag----GCCCCA-------------UCA--UCCGCUCCg -5'
26318 3' -54.9 NC_005345.2 + 31236 0.69 0.521629
Target:  5'- uGUACGgcgggUCCGGGGUcgggugcgcacucgGGUgcgcgggugcggGGGCGGGuGCg -3'
miRNA:   3'- -CGUGUa----AGGCCCCA--------------UCA------------UCCGCUC-CG- -5'
26318 3' -54.9 NC_005345.2 + 45468 0.69 0.546277
Target:  5'- -gACGgcggCCGGGGUGGgcaugucGGCGaAGGUg -3'
miRNA:   3'- cgUGUaa--GGCCCCAUCau-----CCGC-UCCG- -5'
26318 3' -54.9 NC_005345.2 + 48843 0.69 0.524821
Target:  5'- cGCcCcUUCCGGGG-----GGCGGGGCg -3'
miRNA:   3'- -CGuGuAAGGCCCCaucauCCGCUCCG- -5'
26318 3' -54.9 NC_005345.2 + 30872 0.68 0.568007
Target:  5'- cGCGCGggugcUCCGGGu--GcGGGCGAcGGCg -3'
miRNA:   3'- -CGUGUa----AGGCCCcauCaUCCGCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.